diff --git a/nf_core/__main__.py b/nf_core/__main__.py index 194b2030be..4e7b5dda87 100644 --- a/nf_core/__main__.py +++ b/nf_core/__main__.py @@ -9,6 +9,7 @@ import rich.logging import rich.traceback import rich_click as click +from trogon import tui from nf_core import __version__ from nf_core.download import DownloadError @@ -30,7 +31,7 @@ "nf-core": [ { "name": "Commands for users", - "commands": ["list", "launch", "create-params-file", "download", "licences"], + "commands": ["list", "launch", "create-params-file", "download", "licences", "tui"], }, { "name": "Commands for developers", @@ -110,7 +111,7 @@ def run_nf_core(): # Launch the click cli nf_core_cli(auto_envvar_prefix="NFCORE") - +@tui() @click.group(context_settings=dict(help_option_names=["-h", "--help"])) @click.version_option(__version__) @click.option("-v", "--verbose", is_flag=True, default=False, help="Print verbose output to the console.") diff --git a/requirements-dev.txt b/requirements-dev.txt index 6d890f0e1f..9fbb49c10c 100644 --- a/requirements-dev.txt +++ b/requirements-dev.txt @@ -1,13 +1,13 @@ +mypy myst_parser pytest-cov pytest-datafiles responses +ruff Sphinx sphinx-rtd-theme -mypy -types-PyYAML -types-requests types-jsonschema types-Markdown +types-PyYAML +types-requests types-setuptools -ruff diff --git a/requirements.txt b/requirements.txt index add52f4bc6..526efb7306 100644 --- a/requirements.txt +++ b/requirements.txt @@ -5,10 +5,11 @@ jinja2 jsonschema>=3.0 markdown>=3.3 packaging +pdiff pre-commit prompt_toolkit>=3.0.3 -pytest>=7.0.0 pytest-workflow>=1.6.0 +pytest>=7.0.0 pyyaml questionary>=1.8.0 refgenie @@ -17,4 +18,4 @@ requests_cache rich-click>=1.6.1 rich>=13.3.1 tabulate -pdiff +trogon