removed nextflow_config; added passing test (files_exist)

Author: KevinMenden

tests/lint/files_exist.py

@@ -40,4 +40,14 @@ def test_files_exist_depreciated_file(self):
 
     results = lint_obj.files_exist()
     assert results["failed"] == ["File must be removed: `parameters.settings.json`"]
+
+def test_files_exist_pass(self):
+    """Lint check should pass if all files are there"""
 
+    new_pipeline = self._make_pipeline_copy()
+    lint_obj = nf_core.lint.PipelineLint(new_pipeline)
+    lint_obj._load()
+
+    results = lint_obj.files_exist()
+    assert results["failed"] == []
+

tests/lint/nextflow_config.py

@@ -182,9 +182,16 @@ def test_sphinx_rst_files(self):
         test_actions_awsfulltest_fail,
     )
     from lint.actions_awstest import test_actions_awstest_pass, test_actions_awstest_fail
-    from lint.files_exist import test_missing_config, test_missing_main, test_depreciated_file
-    from lint.licence import test_mit_licence_pass, test_mit_licence_fail
-    from lint.nextflow_config import test_config_variable_example_pass, test_config_variable_fail
+    from lint.files_exist import (
+        test_files_exist_missing_config,
+        test_files_exist_missing_main, 
+        test_files_exist_depreciated_file,
+        test_files_exist_pass
+    )
+    from lint.licence import (
+        test_licence_pass, 
+        test_licence_fail
+    )
     from lint.actions_branch_protection import (
         test_actions_branch_protection_pass,
         test_actions_branch_protection_fail,