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Avoid redundant index-generation in Sentieon-flow. #1046

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asp8200 opened this issue May 26, 2023 · 0 comments
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Avoid redundant index-generation in Sentieon-flow. #1046

asp8200 opened this issue May 26, 2023 · 0 comments
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enhancement New feature or request sentieon

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asp8200 commented May 26, 2023

Description of feature

The sentieon-bwamem module actually generate index-files (default behaviour, cannot be disabled) but currently Sarek recomputes the index-files, since that is what is done for the other aligners. It would be great if we could avoid the redundant index generation when Sarek uses Sentieon-bwamem for alignment.
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enhancement New feature or request sentieon
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@edmundmiller @asp8200