Sample name changed 3.16

[fjosefdz]

Description of the bug

Hi, I notice that on version 3.16 in multiqc data my sample names was changed, adding a _1 or _2 at the end:
e_pal-1001-29-c-1_r_2
e_pal-1001-34-c-1_r_2
e_pal-1001-52-c-1_r_1
e_pal-1001-58-c-1_r_2
but it is not the case on the merge gene expression matrix (salmon.merged.gene_counts_length_scaled.tsv). this is the data from RSeQC read distribution (multiqc_rseqc_read_distribution.txt) but is the same in others. The samples are not duplicated either.

Any clue why is this happening?

Command used and terminal output

No response

Relevant files

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System information

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