diff --git a/CHANGELOG.md b/CHANGELOG.md index a4394542..5808266d 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,18 +3,6 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). -## v3.0.2 - [date] - -### Added - -### Changed - -### Fixed - -- fix VCF_COLLECT handling when a tool is absent from FUSIONREPORT report - -### Removed - ## v3.0.1 - [2023-11-29] ### Added diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml index 5930000d..dd83ce70 100644 --- a/assets/multiqc_config.yml +++ b/assets/multiqc_config.yml @@ -1,7 +1,7 @@ report_comment: > - This report has been generated by the nf-core/rnafusion + This report has been generated by the nf-core/rnafusion analysis pipeline. For information about how to interpret these results, please see the - documentation. + documentation. report_section_order: nf-core-rnafusion-methods-description: diff --git a/bin/vcf_collect.py b/bin/vcf_collect.py index 2c25574f..a8ab85f4 100755 --- a/bin/vcf_collect.py +++ b/bin/vcf_collect.py @@ -346,11 +346,8 @@ def read_build_fusionreport(fusionreport_file: str) -> pd.DataFrame: def read_fusionreport_csv(file: str) -> pd.DataFrame: df = pd.read_csv(file) - columns_to_iterate = ["starfusion", "arriba", "fusioncatcher"] - for column in columns_to_iterate: - if column not in df.columns: - df[column] = "" df[["starfusion", "arriba", "fusioncatcher"]] = df[["starfusion", "arriba", "fusioncatcher"]].astype("str") + columns_to_iterate = ["starfusion", "arriba", "fusioncatcher"] for index, row in df.iterrows(): for column in columns_to_iterate: cell_value = row[column] diff --git a/nextflow.config b/nextflow.config index b25aa1e3..3a54be0c 100644 --- a/nextflow.config +++ b/nextflow.config @@ -290,7 +290,7 @@ manifest { description = """Nextflow rnafusion analysis pipeline, part of the nf-core community.""" mainScript = 'main.nf' nextflowVersion = '!>=23.04.0' - version = '3.0.2dev' + version = '3.0.1' doi = '' }