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restore samtools modules version bump #6685

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merged 3 commits into from
Sep 24, 2024

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maxulysse
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PR checklist

Closes #XXX

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Emit the versions.yml file.
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

@maxulysse
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It should restore some efforts made in #6648 that were reverted by #6674

@maxulysse maxulysse requested a review from phue as a code owner September 24, 2024 09:02
@maxulysse
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Just 14 failures, I'm impressed

@maxulysse maxulysse merged commit b13f07b into nf-core:master Sep 24, 2024
161 of 163 checks passed
@maxulysse
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Just 14 failures, I'm impressed

only 1 left on retry, so force-merging

@maxulysse maxulysse deleted the samtools_groundhog_bump branch September 24, 2024 09:49
@apeltzer
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Just 14 failures, I'm impressed

only 1 left on retry, so force-merging

🤠

herpov pushed a commit to herpov/modules that referenced this pull request Oct 2, 2024
* restore samtools modules version bump

* add htslib

* same environment.yml file for each samtools modules
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3 participants