From f5e09ec53267a06c4ae6855062999451373d59f0 Mon Sep 17 00:00:00 2001 From: "renovate[bot]" <29139614+renovate[bot]@users.noreply.github.com> Date: Fri, 6 Dec 2024 12:28:31 +0000 Subject: [PATCH] Update biocontainers/agat Docker tag to v1.4.2 --- modules/nf-core/agat/convertspgff2gtf/main.nf | 2 +- modules/nf-core/agat/convertspgff2tsv/main.nf | 2 +- modules/nf-core/agat/convertspgxf2gxf/main.nf | 2 +- modules/nf-core/agat/spaddintrons/main.nf | 2 +- modules/nf-core/agat/spfilterfeaturefromkilllist/main.nf | 2 +- modules/nf-core/agat/spmergeannotations/main.nf | 2 +- modules/nf-core/agat/spstatistics/main.nf | 2 +- modules/nf-core/agat/sqstatbasic/main.nf | 2 +- 8 files changed, 8 insertions(+), 8 deletions(-) diff --git a/modules/nf-core/agat/convertspgff2gtf/main.nf b/modules/nf-core/agat/convertspgff2gtf/main.nf index 38af025ea16..628b10c9ce7 100644 --- a/modules/nf-core/agat/convertspgff2gtf/main.nf +++ b/modules/nf-core/agat/convertspgff2gtf/main.nf @@ -5,7 +5,7 @@ process AGAT_CONVERTSPGFF2GTF { conda "${moduleDir}/environment.yml" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/agat:1.4.0--pl5321hdfd78af_0' : - 'biocontainers/agat:1.4.0--pl5321hdfd78af_0' }" + 'biocontainers/agat:1.4.2--pl5321hdfd78af_0' }" input: tuple val(meta), path(gff) diff --git a/modules/nf-core/agat/convertspgff2tsv/main.nf b/modules/nf-core/agat/convertspgff2tsv/main.nf index a6f73b6c1e7..a61940dcb9c 100644 --- a/modules/nf-core/agat/convertspgff2tsv/main.nf +++ b/modules/nf-core/agat/convertspgff2tsv/main.nf @@ -5,7 +5,7 @@ process AGAT_CONVERTSPGFF2TSV { conda "${moduleDir}/environment.yml" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/agat:1.4.0--pl5321hdfd78af_0' : - 'biocontainers/agat:1.4.0--pl5321hdfd78af_0' }" + 'biocontainers/agat:1.4.2--pl5321hdfd78af_0' }" input: tuple val(meta), path(gff) diff --git a/modules/nf-core/agat/convertspgxf2gxf/main.nf b/modules/nf-core/agat/convertspgxf2gxf/main.nf index b9a766830f7..5dd6b0957a2 100644 --- a/modules/nf-core/agat/convertspgxf2gxf/main.nf +++ b/modules/nf-core/agat/convertspgxf2gxf/main.nf @@ -5,7 +5,7 @@ process AGAT_CONVERTSPGXF2GXF { conda "${moduleDir}/environment.yml" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/agat:1.4.0--pl5321hdfd78af_0' : - 'biocontainers/agat:1.4.0--pl5321hdfd78af_0' }" + 'biocontainers/agat:1.4.2--pl5321hdfd78af_0' }" input: tuple val(meta), path(gxf) diff --git a/modules/nf-core/agat/spaddintrons/main.nf b/modules/nf-core/agat/spaddintrons/main.nf index 3db8a4391c9..a4b9c42944e 100644 --- a/modules/nf-core/agat/spaddintrons/main.nf +++ b/modules/nf-core/agat/spaddintrons/main.nf @@ -5,7 +5,7 @@ process AGAT_SPADDINTRONS { conda "${moduleDir}/environment.yml" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/agat:1.4.0--pl5321hdfd78af_0': - 'biocontainers/agat:1.4.0--pl5321hdfd78af_0' }" + 'biocontainers/agat:1.4.2--pl5321hdfd78af_0' }" input: tuple val(meta), path(gff) diff --git a/modules/nf-core/agat/spfilterfeaturefromkilllist/main.nf b/modules/nf-core/agat/spfilterfeaturefromkilllist/main.nf index 4918ed7f340..b55e45754d1 100644 --- a/modules/nf-core/agat/spfilterfeaturefromkilllist/main.nf +++ b/modules/nf-core/agat/spfilterfeaturefromkilllist/main.nf @@ -5,7 +5,7 @@ process AGAT_SPFILTERFEATUREFROMKILLLIST { conda "${moduleDir}/environment.yml" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/agat:1.4.0--pl5321hdfd78af_0': - 'biocontainers/agat:1.4.0--pl5321hdfd78af_0' }" + 'biocontainers/agat:1.4.2--pl5321hdfd78af_0' }" input: tuple val(meta), path(gff) diff --git a/modules/nf-core/agat/spmergeannotations/main.nf b/modules/nf-core/agat/spmergeannotations/main.nf index e0861c08095..d630bc6ed4c 100644 --- a/modules/nf-core/agat/spmergeannotations/main.nf +++ b/modules/nf-core/agat/spmergeannotations/main.nf @@ -5,7 +5,7 @@ process AGAT_SPMERGEANNOTATIONS { conda "${moduleDir}/environment.yml" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/agat:1.4.0--pl5321hdfd78af_0': - 'biocontainers/agat:1.4.0--pl5321hdfd78af_0' }" + 'biocontainers/agat:1.4.2--pl5321hdfd78af_0' }" input: tuple val(meta), path(gffs) diff --git a/modules/nf-core/agat/spstatistics/main.nf b/modules/nf-core/agat/spstatistics/main.nf index fd69d9c50ba..939d41e0e61 100644 --- a/modules/nf-core/agat/spstatistics/main.nf +++ b/modules/nf-core/agat/spstatistics/main.nf @@ -5,7 +5,7 @@ process AGAT_SPSTATISTICS { conda "${moduleDir}/environment.yml" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/agat:1.4.0--pl5321hdfd78af_0' : - 'biocontainers/agat:1.4.0--pl5321hdfd78af_0' }" + 'biocontainers/agat:1.4.2--pl5321hdfd78af_0' }" input: tuple val(meta), path(gff) diff --git a/modules/nf-core/agat/sqstatbasic/main.nf b/modules/nf-core/agat/sqstatbasic/main.nf index d9b98c6b54a..1f765655eee 100644 --- a/modules/nf-core/agat/sqstatbasic/main.nf +++ b/modules/nf-core/agat/sqstatbasic/main.nf @@ -5,7 +5,7 @@ process AGAT_SQSTATBASIC { conda "${moduleDir}/environment.yml" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/agat:1.4.0--pl5321hdfd78af_0' : - 'biocontainers/agat:1.4.0--pl5321hdfd78af_0' }" + 'biocontainers/agat:1.4.2--pl5321hdfd78af_0' }" input: tuple val(meta), path(gff)