Update biocontainers/agat Docker tag to v1.4.2

nf-core · Dec 6, 2024 · f5e09ec · f5e09ec
1 parent a437c79
commit f5e09ec
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Showing 8 changed files with 8 additions and 8 deletions.
diff --git a/modules/nf-core/agat/convertspgff2gtf/main.nf b/modules/nf-core/agat/convertspgff2gtf/main.nf
@@ -5,7 +5,7 @@ process AGAT_CONVERTSPGFF2GTF {
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/agat:1.4.0--pl5321hdfd78af_0' :
-        'biocontainers/agat:1.4.0--pl5321hdfd78af_0' }"
+        'biocontainers/agat:1.4.2--pl5321hdfd78af_0' }"
 
     input:
     tuple val(meta), path(gff)

diff --git a/modules/nf-core/agat/convertspgff2tsv/main.nf b/modules/nf-core/agat/convertspgff2tsv/main.nf
@@ -5,7 +5,7 @@ process AGAT_CONVERTSPGFF2TSV {
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/agat:1.4.0--pl5321hdfd78af_0' :
-        'biocontainers/agat:1.4.0--pl5321hdfd78af_0' }"
+        'biocontainers/agat:1.4.2--pl5321hdfd78af_0' }"
 
     input:
     tuple val(meta), path(gff)

diff --git a/modules/nf-core/agat/convertspgxf2gxf/main.nf b/modules/nf-core/agat/convertspgxf2gxf/main.nf
@@ -5,7 +5,7 @@ process AGAT_CONVERTSPGXF2GXF {
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/agat:1.4.0--pl5321hdfd78af_0' :
-        'biocontainers/agat:1.4.0--pl5321hdfd78af_0' }"
+        'biocontainers/agat:1.4.2--pl5321hdfd78af_0' }"
 
     input:
     tuple val(meta), path(gxf)

diff --git a/modules/nf-core/agat/spaddintrons/main.nf b/modules/nf-core/agat/spaddintrons/main.nf
@@ -5,7 +5,7 @@ process AGAT_SPADDINTRONS {
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/agat:1.4.0--pl5321hdfd78af_0':
-        'biocontainers/agat:1.4.0--pl5321hdfd78af_0' }"
+        'biocontainers/agat:1.4.2--pl5321hdfd78af_0' }"
 
     input:
     tuple val(meta), path(gff)

diff --git a/modules/nf-core/agat/spfilterfeaturefromkilllist/main.nf b/modules/nf-core/agat/spfilterfeaturefromkilllist/main.nf
@@ -5,7 +5,7 @@ process AGAT_SPFILTERFEATUREFROMKILLLIST {
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/agat:1.4.0--pl5321hdfd78af_0':
-        'biocontainers/agat:1.4.0--pl5321hdfd78af_0' }"
+        'biocontainers/agat:1.4.2--pl5321hdfd78af_0' }"
 
     input:
     tuple val(meta), path(gff)

diff --git a/modules/nf-core/agat/spmergeannotations/main.nf b/modules/nf-core/agat/spmergeannotations/main.nf
@@ -5,7 +5,7 @@ process AGAT_SPMERGEANNOTATIONS {
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/agat:1.4.0--pl5321hdfd78af_0':
-        'biocontainers/agat:1.4.0--pl5321hdfd78af_0' }"
+        'biocontainers/agat:1.4.2--pl5321hdfd78af_0' }"
 
     input:
     tuple val(meta), path(gffs)

diff --git a/modules/nf-core/agat/spstatistics/main.nf b/modules/nf-core/agat/spstatistics/main.nf
@@ -5,7 +5,7 @@ process AGAT_SPSTATISTICS {
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/agat:1.4.0--pl5321hdfd78af_0' :
-        'biocontainers/agat:1.4.0--pl5321hdfd78af_0' }"
+        'biocontainers/agat:1.4.2--pl5321hdfd78af_0' }"
 
     input:
     tuple val(meta), path(gff)

diff --git a/modules/nf-core/agat/sqstatbasic/main.nf b/modules/nf-core/agat/sqstatbasic/main.nf
@@ -5,7 +5,7 @@ process AGAT_SQSTATBASIC {
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/agat:1.4.0--pl5321hdfd78af_0' :
-        'biocontainers/agat:1.4.0--pl5321hdfd78af_0' }"
+        'biocontainers/agat:1.4.2--pl5321hdfd78af_0' }"
 
     input:
     tuple val(meta), path(gff)