restore samtools modules version bump (#6685)

* restore samtools modules version bump

* add htslib

* same environment.yml file for each samtools modules

modules/nf-core/samtools/ampliconclip/environment.yml

@@ -1,7 +1,8 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
-
 dependencies:
-  - bioconda::htslib=1.20
-  - bioconda::samtools=1.20
+  - bioconda::htslib=1.21
+  - bioconda::samtools=1.21

modules/nf-core/samtools/bam2fq/environment.yml

@@ -1,7 +1,8 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
-
 dependencies:
-  - bioconda::htslib=1.20
-  - bioconda::samtools=1.20
+  - bioconda::htslib=1.21
+  - bioconda::samtools=1.21

modules/nf-core/samtools/calmd/environment.yml

@@ -1,7 +1,8 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
-
 dependencies:
-  - bioconda::htslib=1.20
-  - bioconda::samtools=1.20
+  - bioconda::htslib=1.21
+  - bioconda::samtools=1.21

modules/nf-core/samtools/cat/environment.yml

@@ -1,7 +1,8 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
-
 dependencies:
-  - bioconda::htslib=1.20
-  - bioconda::samtools=1.20
+  - bioconda::htslib=1.21
+  - bioconda::samtools=1.21

modules/nf-core/samtools/collate/environment.yml

@@ -1,7 +1,8 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
-
 dependencies:
-  - bioconda::htslib=1.20
-  - bioconda::samtools=1.20
+  - bioconda::htslib=1.21
+  - bioconda::samtools=1.21

modules/nf-core/samtools/collatefastq/environment.yml

@@ -1,7 +1,8 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
-
 dependencies:
-  - bioconda::htslib=1.20
-  - bioconda::samtools=1.20
+  - bioconda::htslib=1.21
+  - bioconda::samtools=1.21

modules/nf-core/samtools/consensus/environment.yml

@@ -4,4 +4,5 @@ channels:
   - conda-forge
   - bioconda
 dependencies:
-  - "bioconda::samtools=1.20"
+  - bioconda::htslib=1.21
+  - bioconda::samtools=1.21

modules/nf-core/samtools/convert/environment.yml

@@ -1,7 +1,8 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
-
 dependencies:
-  - bioconda::htslib=1.20
-  - bioconda::samtools=1.20
+  - bioconda::htslib=1.21
+  - bioconda::samtools=1.21

modules/nf-core/samtools/coverage/environment.yml

@@ -1,7 +1,8 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
-
 dependencies:
-  - bioconda::htslib=1.20
-  - bioconda::samtools=1.20
+  - bioconda::htslib=1.21
+  - bioconda::samtools=1.21

modules/nf-core/samtools/cramsize/environment.yml

@@ -1,7 +1,8 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
-
 dependencies:
   - bioconda::htslib=1.21
   - bioconda::samtools=1.21

modules/nf-core/samtools/depth/environment.yml

@@ -1,7 +1,8 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
-
 dependencies:
-  - bioconda::htslib=1.20
-  - bioconda::samtools=1.20
+  - bioconda::htslib=1.21
+  - bioconda::samtools=1.21

modules/nf-core/samtools/dict/environment.yml

@@ -1,7 +1,8 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
-
 dependencies:
-  - bioconda::htslib=1.20
-  - bioconda::samtools=1.20
+  - bioconda::htslib=1.21
+  - bioconda::samtools=1.21

modules/nf-core/samtools/faidx/environment.yml

@@ -1,7 +1,8 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
-
 dependencies:
   - bioconda::htslib=1.21
   - bioconda::samtools=1.21

modules/nf-core/samtools/fasta/environment.yml

@@ -1,7 +1,8 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
-
 dependencies:
-  - bioconda::htslib=1.20
-  - bioconda::samtools=1.20
+  - bioconda::htslib=1.21
+  - bioconda::samtools=1.21

modules/nf-core/samtools/fastq/environment.yml

@@ -1,7 +1,8 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
-
 dependencies:
-  - bioconda::htslib=1.20
-  - bioconda::samtools=1.20
+  - bioconda::htslib=1.21
+  - bioconda::samtools=1.21

modules/nf-core/samtools/fixmate/environment.yml

@@ -1,7 +1,8 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
-
 dependencies:
-  - bioconda::htslib=1.20
-  - bioconda::samtools=1.20
+  - bioconda::htslib=1.21
+  - bioconda::samtools=1.21

modules/nf-core/samtools/flagstat/environment.yml

@@ -1,7 +1,8 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
-
 dependencies:
-  - bioconda::htslib=1.20
-  - bioconda::samtools=1.20
+  - bioconda::htslib=1.21
+  - bioconda::samtools=1.21

modules/nf-core/samtools/getrg/environment.yml

@@ -1,7 +1,8 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
-
 dependencies:
-  - bioconda::htslib=1.20
-  - bioconda::samtools=1.20
+  - bioconda::htslib=1.21
+  - bioconda::samtools=1.21

modules/nf-core/samtools/idxstats/environment.yml

@@ -1,7 +1,8 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
-
 dependencies:
-  - bioconda::htslib=1.20
-  - bioconda::samtools=1.20
+  - bioconda::htslib=1.21
+  - bioconda::samtools=1.21

modules/nf-core/samtools/import/environment.yml

@@ -1,7 +1,8 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
-
 dependencies:
-  - bioconda::htslib=1.20
-  - bioconda::samtools=1.20
+  - bioconda::htslib=1.21
+  - bioconda::samtools=1.21

modules/nf-core/samtools/index/environment.yml

@@ -1,7 +1,8 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
-
 dependencies:
-  - bioconda::htslib=1.20
-  - bioconda::samtools=1.20
+  - bioconda::htslib=1.21
+  - bioconda::samtools=1.21

modules/nf-core/samtools/markdup/environment.yml

@@ -1,7 +1,8 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
-
 dependencies:
-  - bioconda::htslib=1.20
-  - bioconda::samtools=1.20
+  - bioconda::htslib=1.21
+  - bioconda::samtools=1.21

modules/nf-core/samtools/merge/environment.yml

@@ -1,7 +1,8 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
-
 dependencies:
-  - bioconda::htslib=1.20
-  - bioconda::samtools=1.20
+  - bioconda::htslib=1.21
+  - bioconda::samtools=1.21

modules/nf-core/samtools/mpileup/environment.yml

@@ -1,7 +1,8 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
-
 dependencies:
-  - bioconda::htslib=1.20
-  - bioconda::samtools=1.20
+  - bioconda::htslib=1.21
+  - bioconda::samtools=1.21

modules/nf-core/samtools/reheader/environment.yml

@@ -1,7 +1,8 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
-
 dependencies:
-  - bioconda::htslib=1.20
-  - bioconda::samtools=1.20
+  - bioconda::htslib=1.21
+  - bioconda::samtools=1.21

modules/nf-core/samtools/sormadup/environment.yml

@@ -1,7 +1,8 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
-
 dependencies:
-  - bioconda::htslib=1.20
-  - bioconda::samtools=1.20
+  - bioconda::htslib=1.21
+  - bioconda::samtools=1.21

modules/nf-core/samtools/sort/environment.yml

@@ -1,7 +1,8 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
-
 dependencies:
-  - bioconda::htslib=1.20
-  - bioconda::samtools=1.20
+  - bioconda::htslib=1.21
+  - bioconda::samtools=1.21

modules/nf-core/samtools/stats/environment.yml

@@ -1,7 +1,8 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
-
 dependencies:
-  - bioconda::htslib=1.20
-  - bioconda::samtools=1.20
+  - bioconda::htslib=1.21
+  - bioconda::samtools=1.21

modules/nf-core/samtools/view/environment.yml

@@ -1,7 +1,8 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
-
 dependencies:
-  - bioconda::htslib=1.20
-  - bioconda::samtools=1.20
+  - bioconda::htslib=1.21
+  - bioconda::samtools=1.21