From 0c827c36c24afcff8c87099b4a9ccb10e9574b28 Mon Sep 17 00:00:00 2001
From: Matthias Zepper <6963520+MatthiasZepper@users.noreply.github.com>
Date: Thu, 11 Jul 2024 12:08:24 +0200
Subject: [PATCH] Update dupradar.r according to new MultiQC (>=v1.22) config
 values (#5943)

Update dupradar.r according to new MultiQC config values.

Co-authored-by: Matthias Zepper <MatthiasZepper@users.noreply.github.com>
---
 modules/nf-core/dupradar/templates/dupradar.r | 15 ++++-----------
 1 file changed, 4 insertions(+), 11 deletions(-)

diff --git a/modules/nf-core/dupradar/templates/dupradar.r b/modules/nf-core/dupradar/templates/dupradar.r
index ec20cb85147..7653e587397 100755
--- a/modules/nf-core/dupradar/templates/dupradar.r
+++ b/modules/nf-core/dupradar/templates/dupradar.r
@@ -88,7 +88,6 @@ line="#id: DupInt
 #        max: 100
 #        min: 0
 #        scale: 'RdYlGn-rev'
-#        format: '{:.2f}%'
 Sample dupRadar_intercept"
 
 write(line,file=paste0(output_prefix, "_dup_intercept_mqc.txt"),append=TRUE)
@@ -115,29 +114,23 @@ line="#id: dupradar
 #    This plot shows the general linear models - a summary of the gene duplication distributions. \"
 #pconfig:
 #    title: 'DupRadar General Linear Model'
-#    xLog: True
+#    xlog: True
 #    xlab: 'expression (reads/kbp)'
 #    ylab: '% duplicate reads'
 #    ymax: 100
 #    ymin: 0
 #    tt_label: '<b>{point.x:.1f} reads/kbp</b>: {point.y:,.2f}% duplicates'
-#    xPlotLines:
+#    x_lines:
 #        - color: 'green'
-#          dashStyle: 'LongDash'
+#          dash: 'LongDash'
 #          label:
-#                style: {color: 'green'}
 #                text: '0.5 RPKM'
-#                verticalAlign: 'bottom'
-#                y: -65
 #          value: 0.5
 #          width: 1
 #        - color: 'red'
-#          dashStyle: 'LongDash'
+#          dash: 'LongDash'
 #          label:
-#                style: {color: 'red'}
 #                text: '1 read/bp'
-#                verticalAlign: 'bottom'
-#                y: -65
 #          value: 1000
 #          width: 1"