restore samtools modules version bump #15558

Run time

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Job	Run time
editorconfig	11s
editorconfig	11s
editorconfig	11s
prettier	30s
prettier	30s
prettier	30s
pytest-changes	4s
pytest-changes	4s
pytest-changes	4s
nf-test-changes	55s
nf-test-changes	55s
nf-test-changes	55s
pre-commit	40s
pre-commit	40s
pre-commit	40s
pytest	0s
pytest	0s
pytest	0s
nf-core-lint-modules (bam_stats_samtools)	43s
nf-core-lint-modules (bam_stats_samtools)	43s
nf-core-lint-modules (bam_stats_samtools)	43s
nf-core-lint-modules (bam_markduplicates_picard)	47s
nf-core-lint-modules (bam_markduplicates_picard)	47s
nf-core-lint-modules (bam_markduplicates_picard)	47s
nf-core-lint-modules (bam_subsampledepth_samtools)	54s
nf-core-lint-modules (bam_subsampledepth_samtools)	54s
nf-core-lint-modules (bam_subsampledepth_samtools)	54s
nf-core-lint-modules (bam_dedup_stats_samtools_umicollapse)	52s
nf-core-lint-modules (bam_dedup_stats_samtools_umicollapse)	52s
nf-core-lint-modules (bam_dedup_stats_samtools_umicollapse)	52s
nf-core-lint-modules (bam_dedup_stats_samtools_umitools)	54s
nf-core-lint-modules (bam_dedup_stats_samtools_umitools)	54s
nf-core-lint-modules (bam_dedup_stats_samtools_umitools)	54s
nf-core-lint-modules (bam_sort_stats_samtools)	50s
nf-core-lint-modules (bam_sort_stats_samtools)	50s
nf-core-lint-modules (bam_sort_stats_samtools)	50s
nf-core-lint-modules (samtools/depth)	1m 27s
nf-core-lint-modules (samtools/depth)	1m 27s
nf-core-lint-modules (samtools/depth)	1m 27s
nf-core-lint-modules (samtools/coverage)	1m 30s
nf-core-lint-modules (samtools/coverage)	1m 30s
nf-core-lint-modules (samtools/coverage)	1m 30s
nf-core-lint-modules (samtools/idxstats)	2m 9s
nf-core-lint-modules (samtools/idxstats)	2m 9s
nf-core-lint-modules (samtools/idxstats)	2m 9s
nf-core-lint-modules (samtools/consensus)	1m 53s
nf-core-lint-modules (samtools/consensus)	1m 53s
nf-core-lint-modules (samtools/consensus)	1m 53s
nf-core-lint-modules (samtools/sormadup)	1m 18s
nf-core-lint-modules (samtools/sormadup)	1m 18s
nf-core-lint-modules (samtools/sormadup)	1m 18s
nf-core-lint-modules (samtools/stats)	1m 26s
nf-core-lint-modules (samtools/stats)	1m 26s
nf-core-lint-modules (samtools/stats)	1m 26s
nf-core-lint-modules (samtools/reheader)	1m 48s
nf-core-lint-modules (samtools/reheader)	1m 48s
nf-core-lint-modules (samtools/reheader)	1m 48s
nf-core-lint-modules (samtools/convert)	1m 30s
nf-core-lint-modules (samtools/convert)	1m 30s
nf-core-lint-modules (samtools/convert)	1m 30s
nf-core-lint-modules (samtools/faidx)	1m 29s
nf-core-lint-modules (samtools/faidx)	1m 29s
nf-core-lint-modules (samtools/faidx)	1m 29s
nf-core-lint-modules (samtools/bam2fq)	2m 5s
nf-core-lint-modules (samtools/bam2fq)	2m 5s
nf-core-lint-modules (samtools/bam2fq)	2m 5s
nf-core-lint-modules (samtools/cramsize)	1m 27s
nf-core-lint-modules (samtools/cramsize)	1m 27s
nf-core-lint-modules (samtools/cramsize)	1m 27s
nf-core-lint-modules (samtools/merge)	1m 58s
nf-core-lint-modules (samtools/merge)	1m 58s
nf-core-lint-modules (samtools/merge)	1m 58s
nf-core-lint-modules (samtools/sort)	1m 56s
nf-core-lint-modules (samtools/sort)	1m 56s
nf-core-lint-modules (samtools/sort)	1m 56s
nf-core-lint-modules (samtools/collate)	2m 4s
nf-core-lint-modules (samtools/collate)	2m 4s
nf-core-lint-modules (samtools/collate)	2m 4s
nf-core-lint-modules (samtools/import)	1m 14s
nf-core-lint-modules (samtools/import)	1m 10s
nf-core-lint-modules (samtools/import)	1m 10s
nf-core-lint-modules (samtools/collatefastq)	1m 15s
nf-core-lint-modules (samtools/collatefastq)	1m 15s
nf-core-lint-modules (samtools/collatefastq)	1m 15s
nf-core-lint-modules (samtools/index)	1m 14s
nf-core-lint-modules (samtools/index)	1m 14s
nf-core-lint-modules (samtools/index)	1m 14s
nf-core-lint-modules (samtools/getrg)	1m 16s
nf-core-lint-modules (samtools/getrg)	1m 16s
nf-core-lint-modules (samtools/getrg)	1m 16s
nf-core-lint-modules (samtools/calmd)	1m 13s
nf-core-lint-modules (samtools/calmd)	1m 13s
nf-core-lint-modules (samtools/calmd)	1m 13s
nf-core-lint-modules (samtools/fastq)	1m 13s
nf-core-lint-modules (samtools/fastq)	1m 13s
nf-core-lint-modules (samtools/fastq)	1m 13s
nf-core-lint-modules (samtools/markdup)	2m 7s
nf-core-lint-modules (samtools/markdup)	2m 7s
nf-core-lint-modules (samtools/markdup)	2m 7s
nf-core-lint-modules (velocyto)	1m 24s
nf-core-lint-modules (velocyto)	1m 24s
nf-core-lint-modules (velocyto)	1m 24s
nf-core-lint-modules (cellsnp/modea)	1m 54s
nf-core-lint-modules (cellsnp/modea)	1m 54s
nf-core-lint-modules (cellsnp/modea)	1m 54s
nf-core-lint-modules (samtools/fixmate)	1m 57s
nf-core-lint-modules (samtools/fixmate)	1m 57s
nf-core-lint-modules (samtools/fixmate)	1m 57s
nf-core-lint-modules (poolsnp)	2m 5s
nf-core-lint-modules (poolsnp)	2m 5s
nf-core-lint-modules (poolsnp)	2m 5s
nf-core-lint-modules (samtools/view)	1m 17s
nf-core-lint-modules (samtools/view)	1m 17s
nf-core-lint-modules (samtools/view)	1m 17s
nf-core-lint-modules (samtools/flagstat)	1m 41s
nf-core-lint-modules (samtools/flagstat)	1m 41s
nf-core-lint-modules (samtools/flagstat)	1m 41s
nf-core-lint-modules (samtools/fasta)	9s
nf-core-lint-modules (samtools/fasta)	2m 22s
nf-core-lint-modules (samtools/fasta)	2m 22s
nf-core-lint-modules (samtools/dict)	1m 29s
nf-core-lint-modules (samtools/dict)	1m 29s
nf-core-lint-modules (samtools/dict)	1m 29s
nf-core-lint-modules (samtools/cat)	1m 26s
nf-core-lint-modules (samtools/cat)	1m 26s
nf-core-lint-modules (samtools/cat)	1m 26s
nf-core-lint-modules (vireo)	1m 19s
nf-core-lint-modules (vireo)	1m 19s
nf-core-lint-modules (vireo)	1m 19s
nf-core-lint-modules (samtools/mpileup)	1m 15s
nf-core-lint-modules (samtools/mpileup)	1m 15s
nf-core-lint-modules (samtools/mpileup)	1m 15s
nf-core-lint-modules (samtools/ampliconclip)	1m 19s
nf-core-lint-modules (samtools/ampliconclip)	1m 19s
nf-core-lint-modules (samtools/ampliconclip)	1m 19s
nf-test (modules/nf-core/samtools/depth, conda)	2m 59s
nf-test (modules/nf-core/samtools/depth, conda)	2m 59s
nf-test (modules/nf-core/samtools/depth, conda)	2m 59s
nf-test (modules/nf-core/samtools/depth, docker_self_hosted)	1m 19s
nf-test (modules/nf-core/samtools/depth, docker_self_hosted)	1m 19s
nf-test (modules/nf-core/samtools/depth, docker_self_hosted)	1m 19s
nf-test (modules/nf-core/samtools/depth, singularity)	1m 29s
nf-test (modules/nf-core/samtools/depth, singularity)	1m 29s
nf-test (modules/nf-core/samtools/depth, singularity)	1m 29s
nf-test (modules/nf-core/samtools/coverage, conda)	3m 46s
nf-test (modules/nf-core/samtools/coverage, conda)	3m 46s
nf-test (modules/nf-core/samtools/coverage, conda)	3m 46s
nf-test (modules/nf-core/samtools/coverage, docker_self_hosted)	1m 36s
nf-test (modules/nf-core/samtools/coverage, docker_self_hosted)	1m 36s
nf-test (modules/nf-core/samtools/coverage, docker_self_hosted)	1m 36s
nf-test (modules/nf-core/samtools/coverage, singularity)	1m 29s
nf-test (modules/nf-core/samtools/coverage, singularity)	1m 29s
nf-test (modules/nf-core/samtools/coverage, singularity)	1m 29s
nf-test (subworkflows/nf-core/bam_stats_samtools, conda)	4m 14s
nf-test (subworkflows/nf-core/bam_stats_samtools, conda)	4m 55s
nf-test (subworkflows/nf-core/bam_stats_samtools, conda)	5m 8s
nf-test (subworkflows/nf-core/bam_stats_samtools, docker_self_hosted)	2m 32s
nf-test (subworkflows/nf-core/bam_stats_samtools, docker_self_hosted)	2m 32s
nf-test (subworkflows/nf-core/bam_stats_samtools, docker_self_hosted)	2m 32s
nf-test (subworkflows/nf-core/bam_stats_samtools, singularity)	2m 33s
nf-test (subworkflows/nf-core/bam_stats_samtools, singularity)	2m 33s
nf-test (subworkflows/nf-core/bam_stats_samtools, singularity)	2m 33s
nf-test (modules/nf-core/samtools/idxstats, conda)	2m 35s
nf-test (modules/nf-core/samtools/idxstats, conda)	2m 35s
nf-test (modules/nf-core/samtools/idxstats, conda)	2m 35s
nf-test (modules/nf-core/samtools/idxstats, docker_self_hosted)	1m 10s
nf-test (modules/nf-core/samtools/idxstats, docker_self_hosted)	1m 10s
nf-test (modules/nf-core/samtools/idxstats, docker_self_hosted)	1m 10s
nf-test (modules/nf-core/samtools/idxstats, singularity)	1m 29s
nf-test (modules/nf-core/samtools/idxstats, singularity)	1m 29s
nf-test (modules/nf-core/samtools/idxstats, singularity)	1m 29s
nf-test (modules/nf-core/samtools/consensus, conda)	3m 27s
nf-test (modules/nf-core/samtools/consensus, conda)	3m 27s
nf-test (modules/nf-core/samtools/consensus, conda)	3m 27s
nf-test (modules/nf-core/samtools/consensus, docker_self_hosted)	1m 53s
nf-test (modules/nf-core/samtools/consensus, docker_self_hosted)	1m 53s
nf-test (modules/nf-core/samtools/consensus, docker_self_hosted)	1m 53s
nf-test (modules/nf-core/samtools/consensus, singularity)	2m 44s
nf-test (modules/nf-core/samtools/consensus, singularity)	2m 44s
nf-test (modules/nf-core/samtools/consensus, singularity)	2m 44s
nf-test (modules/nf-core/samtools/sormadup, conda)	2m 59s
nf-test (modules/nf-core/samtools/sormadup, conda)	2m 59s
nf-test (modules/nf-core/samtools/sormadup, conda)	2m 59s
nf-test (modules/nf-core/samtools/sormadup, docker_self_hosted)	1m 18s
nf-test (modules/nf-core/samtools/sormadup, docker_self_hosted)	1m 18s
nf-test (modules/nf-core/samtools/sormadup, docker_self_hosted)	1m 18s
nf-test (modules/nf-core/samtools/sormadup, singularity)	1m 28s
nf-test (modules/nf-core/samtools/sormadup, singularity)	1m 28s
nf-test (modules/nf-core/samtools/sormadup, singularity)	1m 28s
nf-test (modules/nf-core/samtools/stats, conda)	3m 47s
nf-test (modules/nf-core/samtools/stats, conda)	3m 47s
nf-test (modules/nf-core/samtools/stats, conda)	3m 47s
nf-test (modules/nf-core/samtools/stats, docker_self_hosted)	1m 44s
nf-test (modules/nf-core/samtools/stats, docker_self_hosted)	1m 44s
nf-test (modules/nf-core/samtools/stats, docker_self_hosted)	1m 44s
nf-test (modules/nf-core/samtools/stats, singularity)	1m 50s
nf-test (modules/nf-core/samtools/stats, singularity)	1m 50s
nf-test (modules/nf-core/samtools/stats, singularity)	1m 50s
nf-test (modules/nf-core/samtools/reheader, conda)	4m 6s
nf-test (modules/nf-core/samtools/reheader, conda)	4m 6s
nf-test (modules/nf-core/samtools/reheader, conda)	4m 6s
nf-test (modules/nf-core/samtools/reheader, docker_self_hosted)	1m 22s
nf-test (modules/nf-core/samtools/reheader, docker_self_hosted)	1m 22s
nf-test (modules/nf-core/samtools/reheader, docker_self_hosted)	1m 22s
nf-test (modules/nf-core/samtools/reheader, singularity)	1m 26s
nf-test (modules/nf-core/samtools/reheader, singularity)	1m 26s
nf-test (modules/nf-core/samtools/reheader, singularity)	1m 26s
nf-test (modules/nf-core/samtools/convert, conda)	3m 22s
nf-test (modules/nf-core/samtools/convert, conda)	3m 22s
nf-test (modules/nf-core/samtools/convert, conda)	3m 22s
nf-test (modules/nf-core/samtools/convert, docker_self_hosted)	1m 46s
nf-test (modules/nf-core/samtools/convert, docker_self_hosted)	1m 46s
nf-test (modules/nf-core/samtools/convert, docker_self_hosted)	1m 46s
nf-test (modules/nf-core/samtools/convert, singularity)	2m 19s
nf-test (modules/nf-core/samtools/convert, singularity)	2m 19s
nf-test (modules/nf-core/samtools/convert, singularity)	2m 19s
nf-test (modules/nf-core/samtools/faidx, conda)	4m 21s
nf-test (modules/nf-core/samtools/faidx, conda)	4m 21s
nf-test (modules/nf-core/samtools/faidx, conda)	4m 21s
nf-test (modules/nf-core/samtools/faidx, docker_self_hosted)	2m 13s
nf-test (modules/nf-core/samtools/faidx, docker_self_hosted)	2m 13s
nf-test (modules/nf-core/samtools/faidx, docker_self_hosted)	2m 13s
nf-test (modules/nf-core/samtools/faidx, singularity)	2m 48s
nf-test (modules/nf-core/samtools/faidx, singularity)	2m 48s
nf-test (modules/nf-core/samtools/faidx, singularity)	2m 48s
nf-test (modules/nf-core/samtools/bam2fq, conda)	3m 9s
nf-test (modules/nf-core/samtools/bam2fq, conda)	3m 9s
nf-test (modules/nf-core/samtools/bam2fq, conda)	3m 9s
nf-test (modules/nf-core/samtools/bam2fq, docker_self_hosted)	1m 18s
nf-test (modules/nf-core/samtools/bam2fq, docker_self_hosted)	1m 18s
nf-test (modules/nf-core/samtools/bam2fq, docker_self_hosted)	1m 18s
nf-test (modules/nf-core/samtools/bam2fq, singularity)	1m 24s
nf-test (modules/nf-core/samtools/bam2fq, singularity)	1m 24s
nf-test (modules/nf-core/samtools/bam2fq, singularity)	1m 24s
nf-test (modules/nf-core/samtools/cramsize, conda)	2m 30s
nf-test (modules/nf-core/samtools/cramsize, conda)	2m 30s
nf-test (modules/nf-core/samtools/cramsize, conda)	2m 30s
nf-test (modules/nf-core/samtools/cramsize, docker_self_hosted)	1m 15s
nf-test (modules/nf-core/samtools/cramsize, docker_self_hosted)	1m 15s
nf-test (modules/nf-core/samtools/cramsize, docker_self_hosted)	1m 15s
nf-test (modules/nf-core/samtools/cramsize, singularity)	1m 13s
nf-test (modules/nf-core/samtools/cramsize, singularity)	1m 13s
nf-test (modules/nf-core/samtools/cramsize, singularity)	1m 13s
nf-test (modules/nf-core/samtools/merge, conda)	4m 10s
nf-test (modules/nf-core/samtools/merge, conda)	4m 10s
nf-test (modules/nf-core/samtools/merge, conda)	4m 10s
nf-test (modules/nf-core/samtools/merge, docker_self_hosted)	2m 41s
nf-test (modules/nf-core/samtools/merge, docker_self_hosted)	2m 41s
nf-test (modules/nf-core/samtools/merge, docker_self_hosted)	2m 41s
nf-test (modules/nf-core/samtools/merge, singularity)	2m 52s
nf-test (modules/nf-core/samtools/merge, singularity)	2m 52s
nf-test (modules/nf-core/samtools/merge, singularity)	2m 52s
nf-test (subworkflows/nf-core/bam_markduplicates_picard, conda)	6m 1s
nf-test (subworkflows/nf-core/bam_markduplicates_picard, conda)	6m 1s
nf-test (subworkflows/nf-core/bam_markduplicates_picard, conda)	6m 1s
nf-test (subworkflows/nf-core/bam_markduplicates_picard, docker_self_hosted)	4m 5s
nf-test (subworkflows/nf-core/bam_markduplicates_picard, docker_self_hosted)	4m 5s
nf-test (subworkflows/nf-core/bam_markduplicates_picard, docker_self_hosted)	4m 5s
nf-test (subworkflows/nf-core/bam_markduplicates_picard, singularity)	4m 44s
nf-test (subworkflows/nf-core/bam_markduplicates_picard, singularity)	4m 44s
nf-test (subworkflows/nf-core/bam_markduplicates_picard, singularity)	4m 44s
nf-test (modules/nf-core/samtools/sort, conda)	4m 43s
nf-test (modules/nf-core/samtools/sort, conda)	4m 43s
nf-test (modules/nf-core/samtools/sort, conda)	4m 43s
nf-test (modules/nf-core/samtools/sort, docker_self_hosted)	1m 8s
nf-test (modules/nf-core/samtools/sort, docker_self_hosted)	2m 29s
nf-test (modules/nf-core/samtools/sort, docker_self_hosted)	2m 29s
nf-test (modules/nf-core/samtools/sort, singularity)	1m 53s
nf-test (modules/nf-core/samtools/sort, singularity)	1m 53s
nf-test (modules/nf-core/samtools/sort, singularity)	1m 53s
nf-test (modules/nf-core/samtools/collate, conda)	2m 39s
nf-test (modules/nf-core/samtools/collate, conda)	2m 39s
nf-test (modules/nf-core/samtools/collate, conda)	2m 39s
nf-test (modules/nf-core/samtools/collate, docker_self_hosted)	1m 10s
nf-test (modules/nf-core/samtools/collate, docker_self_hosted)	1m 10s
nf-test (modules/nf-core/samtools/collate, docker_self_hosted)	1m 10s
nf-test (modules/nf-core/samtools/collate, singularity)	1m 9s
nf-test (modules/nf-core/samtools/collate, singularity)	2m 19s
nf-test (modules/nf-core/samtools/collate, singularity)	2m 19s
nf-test (modules/nf-core/samtools/import, conda)	3m 2s
nf-test (modules/nf-core/samtools/import, conda)	3m 2s
nf-test (modules/nf-core/samtools/import, conda)	3m 2s
nf-test (modules/nf-core/samtools/import, docker_self_hosted)	1m 39s
nf-test (modules/nf-core/samtools/import, docker_self_hosted)	1m 39s
nf-test (modules/nf-core/samtools/import, docker_self_hosted)	1m 39s
nf-test (modules/nf-core/samtools/import, singularity)	1m 54s
nf-test (modules/nf-core/samtools/import, singularity)	1m 54s
nf-test (modules/nf-core/samtools/import, singularity)	1m 54s
nf-test (modules/nf-core/samtools/collatefastq, conda)	5m 42s
nf-test (modules/nf-core/samtools/collatefastq, conda)	5m 42s
nf-test (modules/nf-core/samtools/collatefastq, conda)	5m 42s
nf-test (modules/nf-core/samtools/collatefastq, docker_self_hosted)	3m 27s
nf-test (modules/nf-core/samtools/collatefastq, docker_self_hosted)	3m 27s
nf-test (modules/nf-core/samtools/collatefastq, docker_self_hosted)	3m 27s
nf-test (modules/nf-core/samtools/collatefastq, singularity)	1m 5s
nf-test (modules/nf-core/samtools/collatefastq, singularity)	3m 51s
nf-test (modules/nf-core/samtools/collatefastq, singularity)	3m 51s
nf-test (subworkflows/nf-core/bam_subsampledepth_samtools, conda)	3m 1s
nf-test (subworkflows/nf-core/bam_subsampledepth_samtools, conda)	3m 1s
nf-test (subworkflows/nf-core/bam_subsampledepth_samtools, conda)	3m 1s
nf-test (subworkflows/nf-core/bam_subsampledepth_samtools, docker_self_hosted)	1m 22s
nf-test (subworkflows/nf-core/bam_subsampledepth_samtools, docker_self_hosted)	1m 22s
nf-test (subworkflows/nf-core/bam_subsampledepth_samtools, docker_self_hosted)	1m 22s
nf-test (subworkflows/nf-core/bam_subsampledepth_samtools, singularity)	1m 32s
nf-test (subworkflows/nf-core/bam_subsampledepth_samtools, singularity)	1m 32s
nf-test (subworkflows/nf-core/bam_subsampledepth_samtools, singularity)	1m 32s
nf-test (modules/nf-core/samtools/index, conda)	4m 16s
nf-test (modules/nf-core/samtools/index, conda)	4m 16s
nf-test (modules/nf-core/samtools/index, conda)	4m 16s
nf-test (modules/nf-core/samtools/index, docker_self_hosted)	2m 39s
nf-test (modules/nf-core/samtools/index, docker_self_hosted)	2m 39s
nf-test (modules/nf-core/samtools/index, docker_self_hosted)	2m 39s
nf-test (modules/nf-core/samtools/index, singularity)	3m 12s
nf-test (modules/nf-core/samtools/index, singularity)	3m 12s
nf-test (modules/nf-core/samtools/index, singularity)	3m 12s
nf-test (modules/nf-core/samtools/getrg, conda)	3m 17s
nf-test (modules/nf-core/samtools/getrg, conda)	3m 17s
nf-test (modules/nf-core/samtools/getrg, conda)	3m 17s
nf-test (modules/nf-core/samtools/getrg, docker_self_hosted)	59s
nf-test (modules/nf-core/samtools/getrg, docker_self_hosted)	59s
nf-test (modules/nf-core/samtools/getrg, docker_self_hosted)	59s
nf-test (modules/nf-core/samtools/getrg, singularity)	1m 10s
nf-test (modules/nf-core/samtools/getrg, singularity)	1m 10s
nf-test (modules/nf-core/samtools/getrg, singularity)	1m 10s
nf-test (modules/nf-core/samtools/calmd, conda)	3m 8s
nf-test (modules/nf-core/samtools/calmd, conda)	3m 8s
nf-test (modules/nf-core/samtools/calmd, conda)	3m 8s
nf-test (modules/nf-core/samtools/calmd, docker_self_hosted)	1s
nf-test (modules/nf-core/samtools/calmd, docker_self_hosted)	1m 58s
nf-test (modules/nf-core/samtools/calmd, docker_self_hosted)	1m 58s
nf-test (modules/nf-core/samtools/calmd, singularity)	1m 27s
nf-test (modules/nf-core/samtools/calmd, singularity)	1m 27s
nf-test (modules/nf-core/samtools/calmd, singularity)	1m 27s
nf-test (modules/nf-core/samtools/fastq, conda)	3m 40s
nf-test (modules/nf-core/samtools/fastq, conda)	3m 40s
nf-test (modules/nf-core/samtools/fastq, conda)	3m 40s
nf-test (modules/nf-core/samtools/fastq, docker_self_hosted)	1m 14s
nf-test (modules/nf-core/samtools/fastq, docker_self_hosted)	1m 14s
nf-test (modules/nf-core/samtools/fastq, docker_self_hosted)	1m 14s
nf-test (modules/nf-core/samtools/fastq, singularity)	1m 25s
nf-test (modules/nf-core/samtools/fastq, singularity)	1m 25s
nf-test (modules/nf-core/samtools/fastq, singularity)	1m 25s
nf-test (modules/nf-core/samtools/markdup, conda)	2m 57s
nf-test (modules/nf-core/samtools/markdup, conda)	2m 57s
nf-test (modules/nf-core/samtools/markdup, conda)	2m 57s
nf-test (modules/nf-core/samtools/markdup, docker_self_hosted)	1m 22s
nf-test (modules/nf-core/samtools/markdup, docker_self_hosted)	1m 22s
nf-test (modules/nf-core/samtools/markdup, docker_self_hosted)	1m 22s
nf-test (modules/nf-core/samtools/markdup, singularity)	2m 16s
nf-test (modules/nf-core/samtools/markdup, singularity)	2m 16s
nf-test (modules/nf-core/samtools/markdup, singularity)	2m 16s
nf-test (modules/nf-core/velocyto, conda)	5m 48s
nf-test (modules/nf-core/velocyto, conda)	5m 48s
nf-test (modules/nf-core/velocyto, conda)	5m 48s
nf-test (modules/nf-core/velocyto, docker_self_hosted)	3m 27s
nf-test (modules/nf-core/velocyto, docker_self_hosted)	3m 27s
nf-test (modules/nf-core/velocyto, docker_self_hosted)	3m 27s
nf-test (modules/nf-core/velocyto, singularity)	3m 14s
nf-test (modules/nf-core/velocyto, singularity)	3m 14s
nf-test (modules/nf-core/velocyto, singularity)	3m 14s
nf-test (subworkflows/nf-core/bam_dedup_stats_samtools_umicollapse, conda)	4m 19s
nf-test (subworkflows/nf-core/bam_dedup_stats_samtools_umicollapse, conda)	4m 19s
nf-test (subworkflows/nf-core/bam_dedup_stats_samtools_umicollapse, conda)	4m 19s
nf-test (subworkflows/nf-core/bam_dedup_stats_samtools_umicollapse, docker_self_hosted)	2m 36s
nf-test (subworkflows/nf-core/bam_dedup_stats_samtools_umicollapse, docker_self_hosted)	2m 36s
nf-test (subworkflows/nf-core/bam_dedup_stats_samtools_umicollapse, docker_self_hosted)	2m 36s
nf-test (subworkflows/nf-core/bam_dedup_stats_samtools_umicollapse, singularity)	3m 58s
nf-test (subworkflows/nf-core/bam_dedup_stats_samtools_umicollapse, singularity)	3m 58s
nf-test (subworkflows/nf-core/bam_dedup_stats_samtools_umicollapse, singularity)	3m 58s
nf-test (modules/nf-core/cellsnp/modea, conda)	3m 13s
nf-test (modules/nf-core/cellsnp/modea, conda)	3m 13s
nf-test (modules/nf-core/cellsnp/modea, conda)	3m 13s
nf-test (modules/nf-core/cellsnp/modea, docker_self_hosted)	1m 23s
nf-test (modules/nf-core/cellsnp/modea, docker_self_hosted)	1m 23s
nf-test (modules/nf-core/cellsnp/modea, docker_self_hosted)	1m 23s
nf-test (modules/nf-core/cellsnp/modea, singularity)	1m 16s
nf-test (modules/nf-core/cellsnp/modea, singularity)	1m 16s
nf-test (modules/nf-core/cellsnp/modea, singularity)	1m 16s
nf-test (modules/nf-core/samtools/fixmate, conda)	3m 6s
nf-test (modules/nf-core/samtools/fixmate, conda)	3m 6s
nf-test (modules/nf-core/samtools/fixmate, conda)	3m 6s
nf-test (modules/nf-core/samtools/fixmate, docker_self_hosted)	58s
nf-test (modules/nf-core/samtools/fixmate, docker_self_hosted)	58s
nf-test (modules/nf-core/samtools/fixmate, docker_self_hosted)	58s
nf-test (modules/nf-core/samtools/fixmate, singularity)	1s
nf-test (modules/nf-core/samtools/fixmate, singularity)	1m 47s
nf-test (modules/nf-core/samtools/fixmate, singularity)	1m 47s
nf-test (modules/nf-core/poolsnp, conda)	5m 53s
nf-test (modules/nf-core/poolsnp, conda)	5m 53s
nf-test (modules/nf-core/poolsnp, conda)	5m 53s
nf-test (modules/nf-core/poolsnp, docker_self_hosted)	2m 3s
nf-test (modules/nf-core/poolsnp, docker_self_hosted)	2m 3s
nf-test (modules/nf-core/poolsnp, docker_self_hosted)	2m 3s
nf-test (modules/nf-core/poolsnp, singularity)	2m 42s
nf-test (modules/nf-core/poolsnp, singularity)	2m 42s
nf-test (modules/nf-core/poolsnp, singularity)	2m 42s
nf-test (modules/nf-core/samtools/view, conda)	3m 57s
nf-test (modules/nf-core/samtools/view, conda)	3m 57s
nf-test (modules/nf-core/samtools/view, conda)	3m 57s
nf-test (modules/nf-core/samtools/view, docker_self_hosted)	2m 19s
nf-test (modules/nf-core/samtools/view, docker_self_hosted)	2m 19s
nf-test (modules/nf-core/samtools/view, docker_self_hosted)	2m 19s
nf-test (modules/nf-core/samtools/view, singularity)	1s
nf-test (modules/nf-core/samtools/view, singularity)	3m 11s
nf-test (modules/nf-core/samtools/view, singularity)	3m 11s
nf-test (modules/nf-core/samtools/flagstat, conda)	1s
nf-test (modules/nf-core/samtools/flagstat, conda)	3m 37s
nf-test (modules/nf-core/samtools/flagstat, conda)	3m 37s
nf-test (modules/nf-core/samtools/flagstat, docker_self_hosted)	1m 12s
nf-test (modules/nf-core/samtools/flagstat, docker_self_hosted)	1m 12s
nf-test (modules/nf-core/samtools/flagstat, docker_self_hosted)	1m 12s
nf-test (modules/nf-core/samtools/flagstat, singularity)	1m 39s
nf-test (modules/nf-core/samtools/flagstat, singularity)	1m 39s
nf-test (modules/nf-core/samtools/flagstat, singularity)	1m 39s
nf-test (modules/nf-core/samtools/fasta, conda)	2m 36s
nf-test (modules/nf-core/samtools/fasta, conda)	2m 36s
nf-test (modules/nf-core/samtools/fasta, conda)	2m 36s
nf-test (modules/nf-core/samtools/fasta, docker_self_hosted)	1m 8s
nf-test (modules/nf-core/samtools/fasta, docker_self_hosted)	1m 8s
nf-test (modules/nf-core/samtools/fasta, docker_self_hosted)	1m 8s
nf-test (modules/nf-core/samtools/fasta, singularity)	1m 32s
nf-test (modules/nf-core/samtools/fasta, singularity)	1m 32s
nf-test (modules/nf-core/samtools/fasta, singularity)	1m 32s
nf-test (modules/nf-core/samtools/dict, conda)	2m 37s
nf-test (modules/nf-core/samtools/dict, conda)	2m 37s
nf-test (modules/nf-core/samtools/dict, conda)	2m 37s
nf-test (modules/nf-core/samtools/dict, docker_self_hosted)	1m 22s
nf-test (modules/nf-core/samtools/dict, docker_self_hosted)	1m 22s
nf-test (modules/nf-core/samtools/dict, docker_self_hosted)	1m 22s
nf-test (modules/nf-core/samtools/dict, singularity)	1m 9s
nf-test (modules/nf-core/samtools/dict, singularity)	1m 9s
nf-test (modules/nf-core/samtools/dict, singularity)	1m 9s
nf-test (subworkflows/nf-core/bam_dedup_stats_samtools_umitools, conda)	4m 33s
nf-test (subworkflows/nf-core/bam_dedup_stats_samtools_umitools, conda)	4m 33s
nf-test (subworkflows/nf-core/bam_dedup_stats_samtools_umitools, conda)	4m 33s
nf-test (subworkflows/nf-core/bam_dedup_stats_samtools_umitools, docker_self_hosted)	2m 9s
nf-test (subworkflows/nf-core/bam_dedup_stats_samtools_umitools, docker_self_hosted)	2m 9s
nf-test (subworkflows/nf-core/bam_dedup_stats_samtools_umitools, docker_self_hosted)	2m 9s
nf-test (subworkflows/nf-core/bam_dedup_stats_samtools_umitools, singularity)	1m 59s
nf-test (subworkflows/nf-core/bam_dedup_stats_samtools_umitools, singularity)	1m 59s
nf-test (subworkflows/nf-core/bam_dedup_stats_samtools_umitools, singularity)	1m 59s
nf-test (modules/nf-core/samtools/cat, conda)	1s
nf-test (modules/nf-core/samtools/cat, conda)	2m 49s
nf-test (modules/nf-core/samtools/cat, conda)	2m 49s
nf-test (modules/nf-core/samtools/cat, docker_self_hosted)	1s
nf-test (modules/nf-core/samtools/cat, docker_self_hosted)	1m 57s
nf-test (modules/nf-core/samtools/cat, docker_self_hosted)	1m 57s
nf-test (modules/nf-core/samtools/cat, singularity)	1m 25s
nf-test (modules/nf-core/samtools/cat, singularity)	1m 25s
nf-test (modules/nf-core/samtools/cat, singularity)	1m 25s
nf-test (modules/nf-core/vireo, conda)	3m 22s
nf-test (modules/nf-core/vireo, conda)	3m 22s
nf-test (modules/nf-core/vireo, conda)	3m 22s
nf-test (modules/nf-core/vireo, docker_self_hosted)	1m 46s
nf-test (modules/nf-core/vireo, docker_self_hosted)	1m 46s
nf-test (modules/nf-core/vireo, docker_self_hosted)	1m 46s
nf-test (modules/nf-core/vireo, singularity)	1m 43s
nf-test (modules/nf-core/vireo, singularity)	1m 43s
nf-test (modules/nf-core/vireo, singularity)	1m 43s
nf-test (subworkflows/nf-core/bam_sort_stats_samtools, conda)	4m 10s
nf-test (subworkflows/nf-core/bam_sort_stats_samtools, conda)	4m 10s
nf-test (subworkflows/nf-core/bam_sort_stats_samtools, conda)	4m 10s
nf-test (subworkflows/nf-core/bam_sort_stats_samtools, docker_self_hosted)	2m 24s
nf-test (subworkflows/nf-core/bam_sort_stats_samtools, docker_self_hosted)	2m 24s
nf-test (subworkflows/nf-core/bam_sort_stats_samtools, docker_self_hosted)	2m 24s
nf-test (subworkflows/nf-core/bam_sort_stats_samtools, singularity)	2m 9s
nf-test (subworkflows/nf-core/bam_sort_stats_samtools, singularity)	2m 9s
nf-test (subworkflows/nf-core/bam_sort_stats_samtools, singularity)	2m 9s
nf-test (modules/nf-core/samtools/mpileup, conda)	1s
nf-test (modules/nf-core/samtools/mpileup, conda)	3m 13s
nf-test (modules/nf-core/samtools/mpileup, conda)	3m 13s
nf-test (modules/nf-core/samtools/mpileup, docker_self_hosted)	1m 13s
nf-test (modules/nf-core/samtools/mpileup, docker_self_hosted)	1m 13s
nf-test (modules/nf-core/samtools/mpileup, docker_self_hosted)	1m 13s
nf-test (modules/nf-core/samtools/mpileup, singularity)	1m 5s
nf-test (modules/nf-core/samtools/mpileup, singularity)	1m 5s
nf-test (modules/nf-core/samtools/mpileup, singularity)	1m 5s
nf-test (modules/nf-core/samtools/ampliconclip, conda)	3m 0s
nf-test (modules/nf-core/samtools/ampliconclip, conda)	3m 0s
nf-test (modules/nf-core/samtools/ampliconclip, conda)	3m 0s
nf-test (modules/nf-core/samtools/ampliconclip, docker_self_hosted)	1m 19s
nf-test (modules/nf-core/samtools/ampliconclip, docker_self_hosted)	1m 19s
nf-test (modules/nf-core/samtools/ampliconclip, docker_self_hosted)	1m 19s
nf-test (modules/nf-core/samtools/ampliconclip, singularity)	1m 36s
nf-test (modules/nf-core/samtools/ampliconclip, singularity)	1m 36s
nf-test (modules/nf-core/samtools/ampliconclip, singularity)	1m 36s
confirm-pass	1s
confirm-pass	1s
confirm-pass	1s
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