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110 Open 351 Closed
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Issues list

Run sort command without pre-calculated minimizer index help wanted Extra attention is needed package: nextclade_cli package: nextclade t:feat Type: request of a new feature, functionality, enchancement
#1554 opened Nov 20, 2024 by ivan-aksamentov
H9Nx (all lineages), H9Nx (Y-lineage), H9Nx (G-lineage), H9Nx (B-lineage) t:feat Type: request of a new feature, functionality, enchancement
#1552 opened Nov 18, 2024 by jurresiegers
6
Feature Request: More categories for '--output-columns-selection' t:feat Type: request of a new feature, functionality, enchancement
#1545 opened Nov 5, 2024 by ammaraziz
2
Allow toggling of sort state by clicking on column name/text itself package: nextclade_web t:feat Type: request of a new feature, functionality, enchancement
#1537 opened Oct 16, 2024 by corneliusroemer
3
Synonymous mutations
#1535 opened Oct 16, 2024 by claudia-as
1
qc algorithm for nonACTGNs needs triage Mark for review and label assignment t:ask Type: question, request of information 1
#1524 opened Sep 23, 2024 by ryhisner
2
Definition of Private Mutation/Deletion in Nextclade CLI ndjson needs triage Mark for review and label assignment t:ask Type: question, request of information 1
#1523 opened Sep 14, 2024 by ryhisner
2
nextclade run with optional dataset tag input good first issue Good for newcomers help wanted Extra attention is needed t:feat Type: request of a new feature, functionality, enchancement
#1521 opened Sep 11, 2024 by jrotieno
5
Nucleotide insertions not shown in peptide tooltip, causing confusion in case of frameshift due to nt insertion package: nextclade_web t:feat Type: request of a new feature, functionality, enchancement
#1520 opened Sep 4, 2024 by whottel
6
Can't do quality control when change reference t:ask Type: question, request of information 1
#1519 opened Sep 3, 2024 by YangJingqii
1
List of mutational changes per clade t:ask Type: question, request of information 1
#1515 opened Aug 2, 2024 by huzuner
2
Add coverage per CDS to output good first issue Good for newcomers help wanted Extra attention is needed t:feat Type: request of a new feature, functionality, enchancement
#1513 opened Jul 19, 2024 by joverlee521
1
8
SVG download for the Results table source: office hours Issue mentioned during office hours t:feat Type: request of a new feature, functionality, enchancement
#1510 opened Jul 11, 2024 by joverlee521
Bioconda workflow failed with push error due to insufficient permissions t:bug Type: bug, error, something isn't working
#1509 opened Jul 11, 2024 by corneliusroemer
7
Rename master to main t:feat Type: request of a new feature, functionality, enchancement
#1488 opened Jun 13, 2024 by genehack
Max marker setting even counts markers that are off package: nextclade_web t:bug Type: bug, error, something isn't working
#1476 opened Jun 5, 2024 by corneliusroemer
[minor] Auspice dataset functionality: URL redirects don't update displayed metadata t:bug Type: bug, error, something isn't working
#1475 opened Jun 5, 2024 by jameshadfield
3
Nextclade Web: don't store unnecessary dataset info in local storage t:bug Type: bug, error, something isn't working
#1464 opened May 30, 2024 by ivan-aksamentov
Nextclade Web: consider rethinking dataset badges t:feat Type: request of a new feature, functionality, enchancement
#1463 opened May 30, 2024 by ivan-aksamentov
1
Nextclade Web: Confusing unwanted dataset switching t:bug Type: bug, error, something isn't working
#1462 opened May 30, 2024 by ivan-aksamentov
3
docs: document nextalign-like use-case docs Documentation related issues good first issue Good for newcomers help wanted Extra attention is needed
#1456 opened May 17, 2024 by ivan-aksamentov
1
When using ?input-fasta= url query param without specifying dataset, web auto-starts analysis (prematurely) package: nextclade_web t:bug Type: bug, error, something isn't working
#1436 opened Apr 17, 2024 by corneliusroemer
5
--input-pcr-primers listed in CLI help options despite being removed in v3 good first issue Good for newcomers help wanted Extra attention is needed t:bug Type: bug, error, something isn't working
#1432 opened Apr 4, 2024 by kapsakcj
2
Add a BA.1 reference for the web nextclade version t:feat Type: request of a new feature, functionality, enchancement
#1426 opened Feb 23, 2024 by murallcl
4
Allow suppression of |(reverse complement) suffix in header of alignment output t:feat Type: request of a new feature, functionality, enchancement
#1378 opened Jan 10, 2024 by corneliusroemer
2
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