Merge pull request #956: tests: pip install without editable mode, fi…

…x ModuleNotFoundError
nextstrain · May 27, 2022 · 446b39d · 446b39d
2 parents e204d3e + e6a749b
commit 446b39d
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diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml
@@ -39,7 +39,7 @@ jobs:
         activate-environment: test
     - run: mamba install mafft raxml fasttree iqtree vcftools
     - run: mamba install biopython=${{ matrix.biopython-version }}
-    - run: pip install -e .[dev]
+    - run: pip install .[dev]
     - run: conda info
     - run: conda list
     - run: pytest -c pytest.python3.ini --cov=augur

diff --git a/augur/io_support/__init__.py b/augur/io_support/__init__.py
diff --git a/devel/test b/devel/test
@@ -26,7 +26,7 @@ fi
 echo Setting up Conda test environment with ${CONDA}
 ${CONDA} create --yes --quiet -n ${ENV_NAME} -c conda-forge -c bioconda augur
 conda activate ${ENV_NAME}
-python3 -m pip install -e .[dev]
+python3 -m pip install .[dev]
 
 # Run unit and functional tests.
 echo Running tests