From 834c27d4fdc3f0b867885572af70843dcdb48935 Mon Sep 17 00:00:00 2001 From: Paolo Di Tommaso Date: Thu, 5 Oct 2023 22:30:47 +0200 Subject: [PATCH] Fix typos [ci fast] Signed-off-by: Paolo Di Tommaso --- .codespellrc | 2 +- changelog.txt | 2 +- .../src/main/groovy/nextflow/splitter/AbstractSplitter.groovy | 2 +- .../src/test/groovy/nextflow/util/LoggerHelperTest.groovy | 4 ++-- plugins/nf-amazon/changelog.txt | 2 +- 5 files changed, 6 insertions(+), 6 deletions(-) diff --git a/.codespellrc b/.codespellrc index 61cfca6bd6..e05919e12b 100644 --- a/.codespellrc +++ b/.codespellrc @@ -3,4 +3,4 @@ skip = .git,*.pdf,*.svg,timeline-expected.html,*.fq,*.min.js,ScriptDslTest.groov # some cases where we need to catch using regex ignore-regex = \bhel\*|fo\\ # some variables, names, etc to ignore -ignore-words-list = splitted,ois,tre,marge,smoot,afile,bams,bais +ignore-words-list = splitted,ois,tre,marge,smoot,afile,bams,bais,pre-pending,re-use diff --git a/changelog.txt b/changelog.txt index bd06cac862..680f92d856 100644 --- a/changelog.txt +++ b/changelog.txt @@ -16,7 +16,7 @@ NEXTFLOW CHANGE-LOG - Document when process directives are evaluated (#4217) [731a29a2] - Fix List of S3 bucket for custom endpoint [4327fa58] - Fix Prevent false positive resumable task [144e0a8a] -- Fix Prevent multi attempts to retrive AWS creds [b30efe36] +- Fix Prevent multi attempts to retrieve AWS creds [b30efe36] - Fix allow_other vulnerability preventing google-batch submissions (#4332) [9b3741e3] - Fix fs list command [29ab2f24] - Fix minor typos in changelogs/source code (#4319) [4ce9f1df] diff --git a/modules/nextflow/src/main/groovy/nextflow/splitter/AbstractSplitter.groovy b/modules/nextflow/src/main/groovy/nextflow/splitter/AbstractSplitter.groovy index b699b69687..728bbba4ec 100644 --- a/modules/nextflow/src/main/groovy/nextflow/splitter/AbstractSplitter.groovy +++ b/modules/nextflow/src/main/groovy/nextflow/splitter/AbstractSplitter.groovy @@ -180,7 +180,7 @@ abstract class AbstractSplitter implements SplitterStrategy { * A non-empty list of objects * @return * Returns the item at position defined by the attribute {@code #elem} in the list specified as parameter. - * When {@code #elem} is equal to -1 find find out the first occourence of a file object. + * When {@code #elem} is equal to -1 find find out the first occurrence of a file object. * If no file is available the first item in the list is returned */ @PackageScope diff --git a/modules/nextflow/src/test/groovy/nextflow/util/LoggerHelperTest.groovy b/modules/nextflow/src/test/groovy/nextflow/util/LoggerHelperTest.groovy index 8b4a7169db..60368e4246 100644 --- a/modules/nextflow/src/test/groovy/nextflow/util/LoggerHelperTest.groovy +++ b/modules/nextflow/src/test/groovy/nextflow/util/LoggerHelperTest.groovy @@ -79,7 +79,7 @@ class LoggerHelperTest extends Specification { def message = """ startup failed: - _nf_script_c9a99616: 3: Unknown process block definition: `outpu` @ line 3, column 4. + _nf_script_c9a99616: 3: Unknown process block definition: `output` @ line 3, column 4. stdout() into (A,B,C) """ .stripIndent().leftTrim() @@ -88,7 +88,7 @@ class LoggerHelperTest extends Specification { expect: LoggerHelper.formatStartupErrorMessage(message) == """ - Unknown process block definition: `outpu` @ line 3, column 4. + Unknown process block definition: `output` @ line 3, column 4. stdout() into (A,B,C) """ .stripIndent().leftTrim() diff --git a/plugins/nf-amazon/changelog.txt b/plugins/nf-amazon/changelog.txt index 4dbd3bac90..12d654ba91 100644 --- a/plugins/nf-amazon/changelog.txt +++ b/plugins/nf-amazon/changelog.txt @@ -4,7 +4,7 @@ nf-amazon changelog - Fix minor typos in changelogs/source code (#4319) [4ce9f1df] - Fix List of S3 bucket for custom endpoint [4327fa58] - Fix support for S3 custom endpoint with anonymous access [03752815] -- Fix Prevent multi attempts to retrive AWS creds [b30efe36] +- Fix Prevent multi attempts to retrieve AWS creds [b30efe36] 2.1.2 - 10 Sep 2023 - Disable staging script for remote work dir (#4282) [80f7cd46]