Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Error with plot_umap() #37

Open
grpinto opened this issue Jan 30, 2025 · 0 comments
Open

Error with plot_umap() #37

grpinto opened this issue Jan 30, 2025 · 0 comments

Comments

@grpinto
Copy link

grpinto commented Jan 30, 2025

I run plot_umap() on the augur object from calculate_auc() and on the sc_sim and I get this error :

plot_umap(augur,sc_sim)
Error in sc@reductions[[reduction]]@cell.embeddings :
no applicable method for @ applied to an object of class "NULL"

and then I actually try to apply UMAP and it does not work :

sc_sim <- RunUMAP(sc_sim, dims = 1:30, reduction = "pca", verbose = FALSE)
Error in slot(object = object, name = s) :
no slot of name "images" for this object of class "Seurat"

does somebody know how to fix this ?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant