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I get Package suggested but not available: 'EGSEA' #117

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stemangiola opened this issue Nov 17, 2023 · 3 comments
Open

I get Package suggested but not available: 'EGSEA' #117

stemangiola opened this issue Nov 17, 2023 · 3 comments
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bug in dependency The root cause of the bug is in a dependency GitHub Actions Issue occurring on GitHub Actions

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@stemangiola
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In tidybulk actions using rworkflows

https://github.com/stemangiola/tidybulk/actions/runs/6900279764/job/18773171864?pr=302

I get

checking package dependencies ... ERROR
  Package suggested but not available: 'EGSEA'
@stemangiola stemangiola added the bug Something isn't working label Nov 17, 2023
@bschilder
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I believe it's because EGSEA is failing on both release and devel:
https://bioconductor.org/packages/release/bioc/html/EGSEA.html
https://bioconductor.org/packages/devel/bioc/html/EGSEA.html

@bschilder bschilder added bug in dependency The root cause of the bug is in a dependency and removed bug Something isn't working labels Nov 17, 2023
@bschilder bschilder self-assigned this Nov 17, 2023
@bschilder bschilder added the GitHub Actions Issue occurring on GitHub Actions label Nov 17, 2023
@stemangiola
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stemangiola commented Nov 17, 2023

As these things happen often, is it possible to

 Checking can be attempted without them by setting the environment
  variable _R_CHECK_FORCE_SUGGESTS_ to a false value.

from the function call?

@bschilder
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As these things happen often, is it possible to

 Checking can be attempted without them by setting the environment
  variable _R_CHECK_FORCE_SUGGESTS_ to a false value.

from the function call?

Sorry for the delay @stemangiola , i forgot to post here that I've added this as an option in the dev version of rworkflows, and it will be available as soon as I can wrap up some other features in the next release.

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