index.md

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slides	Introduction to Bonsai

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A Visual Language for

Scientific Experimentation

bonsai-rx.org

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Biology and rapid prototyping

On the nature of experimental tools:

• Accessible

• Forward-thinking

• Versatile

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.txt interactive digital performance

Elena Dreosti, UCL

Gonçalo Lopes, Kampff Lab

Lorenza Calcaterra, Kampff Lab

André Cordeiro, Nelson Saibo Lab, ITQB

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A metaphor for observable sequences

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A metaphor for observable sequences

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Operator Categories

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Operator Categories

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Skip

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Take

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SkipUntil

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TakeUntil

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CombineLatest

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Transform

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Select

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SelectMany

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SelectMany: Play audio on cue

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SelectMany: Play audio on cue

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TriggeredWindow

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TriggeredWindow: Record triggered video

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Hardware sync all devices on acquisition

Clock deviation: ± 44 µs

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Modular data acquisition interface for neuroscience

open-ephys.org/next-gen-acquisition-system

Modular data acquisition interface for neuroscience

open-ephys.org/next-gen-acquisition-system

Next gen open ephys 3d tracking

Simultaneous 64-channel ephys, 3D-tracking, accelerometer and gyroscope measurements, and optogenetic and electrical stimulation, all acquired and controlled through Bonsai. open-ephys.org/next-gen-acquisition-system

Bonsai + DeepLabCut Live

Open-source visual environment generator

bonvision.github.io

Handles 2D and 3D stimuli with equal ease

bonvision.github.io

Map logical displays to 3D space

bonvision.github.io

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Questions / Brainstorm

Join us in the forums: https://groups.google.com/d/forum/bonsai-users

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