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heatmap not created without sample annotation #118

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ricoderks opened this issue Nov 24, 2021 · 2 comments
Open

heatmap not created without sample annotation #118

ricoderks opened this issue Nov 24, 2021 · 2 comments
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@ricoderks
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There is no heatmap created when there is no sample annotation selected. For the Domenico data set I get the error:

Warning: Error in [[<-.data.frame: replacement has 23 rows, data has 0
  [No stack trace available]
@ergonyc
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ergonyc commented Nov 25, 2021

  • add to the configuration instructions the fact that the annotation tables need to at least have the data matrix indices as colums sample_ID (obs) and feature_name (var)

  • need to disable "aggregate" heatmap option for the degenerate case where there is NO meta-data for samples to agreggate by

Can you confirm that

@ricoderks
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  1. good point. But, I also noticed that when there is feature annotation selected the heatmap does get created.
  2. yes, makes sense

@ergonyc ergonyc added the bug Something isn't working label Nov 29, 2021
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