Rest of config files.

Author: keshav-gandhi

config_template/config_test10.yml

@@ -11,7 +11,7 @@
 
 # Absolute path to input reference fasta file
 # type = string | required: yes
-reference: ../data/H1N1.fa
+reference: data/H1N1.fa
 
 # How to partition the reference for analysis. By default, NEAT will
 # attempt to process one contig per thread. However, if you have very

config_template/config_test11.yml

@@ -11,7 +11,7 @@
 
 # Absolute path to input reference fasta file
 # type = string | required: yes
-reference: ../data/H1N1.fa
+reference: data/H1N1.fa
 
 # How to partition the reference for analysis. By default, NEAT will
 # attempt to process one contig per thread. However, if you have very

config_template/config_test2.yml

@@ -11,7 +11,7 @@
 
 # Absolute path to input reference fasta file
 # type = string | required: yes
-reference: ../data/H1N1.fa
+reference: data/H1N1.fa
 
 # How to partition the reference for analysis. By default, NEAT will
 # attempt to process one contig per thread. However, if you have very

config_template/config_test3.yml

@@ -11,7 +11,7 @@
 
 # Absolute path to input reference fasta file
 # type = string | required: yes
-reference: ../data/H1N1.fa
+reference: data/H1N1.fa
 
 # How to partition the reference for analysis. By default, NEAT will
 # attempt to process one contig per thread. However, if you have very

config_template/config_test4.yml

@@ -11,7 +11,7 @@
 
 # Absolute path to input reference fasta file
 # type = string | required: yes
-reference: ../data/H1N1.fa
+reference: data/H1N1.fa
 
 # How to partition the reference for analysis. By default, NEAT will
 # attempt to process one contig per thread. However, if you have very
@@ -103,7 +103,7 @@ mutation_rate: 0.01
 # Rates must be in the fourth column and be of the form "mut_rate=x.xx"
 # Rates must be between 0.00 and 0.03
 # type: string | required = no
-mutation_bed: ../data/H1N1.bed
+mutation_bed: data/H1N1.bed
 
 # Absolute path to GC content model generated by compute_gc.py
 # type: string | required = no | default: <NEAT_DIR>/neat/models/defaults/default_gc_bias_model.pickle.gz

config_template/config_test5.yml

@@ -11,7 +11,7 @@
 
 # Absolute path to input reference fasta file
 # type = string | required: yes
-reference: ../data/H1N1.fa
+reference: data/H1N1.fa
 
 # How to partition the reference for analysis. By default, NEAT will
 # attempt to process one contig per thread. However, if you have very
@@ -69,7 +69,7 @@ input_variants: .
 # Absolute path to bed file containing reference regions that the simulation
 # should target.
 # type = string | required = no
-target_bed: ../data/H1N1.bed
+target_bed: data/H1N1.bed
 
 # Scalar value for coverage in regions outside the targeted bed. Example 0.5
 # would get you roughly half the coverage as the on target areas. Default is

config_template/config_test6.yml

@@ -11,7 +11,7 @@
 
 # Absolute path to input reference fasta file
 # type = string | required: yes
-reference: ../data/H1N1.fa
+reference: data/H1N1.fa
 
 # How to partition the reference for analysis. By default, NEAT will
 # attempt to process one contig per thread. However, if you have very

config_template/config_test7.yml

@@ -11,7 +11,7 @@
 
 # Absolute path to input reference fasta file
 # type = string | required: yes
-reference: ../data/H1N1.fa
+reference: data/H1N1.fa
 
 # How to partition the reference for analysis. By default, NEAT will
 # attempt to process one contig per thread. However, if you have very

config_template/config_test8.yml

@@ -11,7 +11,7 @@
 
 # Absolute path to input reference fasta file
 # type = string | required: yes
-reference: ../data/H1N1.fa
+reference: data/H1N1.fa
 
 # How to partition the reference for analysis. By default, NEAT will
 # attempt to process one contig per thread. However, if you have very

config_template/config_test9.yml

@@ -11,7 +11,7 @@
 
 # Absolute path to input reference fasta file
 # type = string | required: yes
-reference: ../data/H1N1.fa
+reference: data/H1N1.fa
 
 # How to partition the reference for analysis. By default, NEAT will
 # attempt to process one contig per thread. However, if you have very