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Moved to corect location
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neat/models/error_models.py

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Original file line numberDiff line numberDiff line change
@@ -107,6 +107,16 @@ def quality_index_remap(self, input_read_length, original_read_length):
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return np.array([max([0, original_read_length * n // input_read_length]) for n in range(input_read_length)])
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class MarkovModel:
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def __init__(self):
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# TODO
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pass
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def get_quality_scores(self):
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# TODO
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pass
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class SequencingErrorModel(SnvModel, DeletionModel, InsertionModel, TraditionalModel):
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"""
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This is a SequencingErrorModel class, based on the old SequencingError. This covers both errors and quality

neat/models/models.py

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@@ -525,16 +525,6 @@ def get_quality_scores(self,
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return temp_qual_array[:input_read_length]
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class MarkovModel:
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def __init__(self):
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# TODO
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pass
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def get_quality_scores(self):
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# TODO
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pass
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class ErrorContainer:
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"""
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Holds data for a single error

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