diff --git a/docs/getting_started/installation.rst b/docs/getting_started/installation.rst index 1b176f6..42fcee6 100644 --- a/docs/getting_started/installation.rst +++ b/docs/getting_started/installation.rst @@ -6,7 +6,7 @@ .. _platform: https://iliad-readthedocs.readthedocs.io/en/latest/getting_started/platform_preparation.html .. _token: https://docs.github.com/en/get-started/getting-started-with-git/about-remote-repositories#cloning-with-https-urls .. _creation: https://docs.github.com/en/authentication/keeping-your-account-and-data-secure/managing-your-personal-access-tokens#creating-a-fine-grained-personal-access-token -.. _login: https://cloud.google.com/?hl=en +.. _homepage: https://cloud.google.com/?hl=en .. _getting_started/installation: ============ @@ -26,7 +26,7 @@ Many HPC users at an academic institution will already have Singularity on their Google Cloud Platform server - Linux (Ubuntu) ==================================================================== -First, you will have to use your google account or create one and login_. +First, you will have to use your google account or create one at the GCP homepage_. Step 1: Install Snakemake and Snakedeploy ***************************************** @@ -258,6 +258,8 @@ For running the workflow while deploying any necessary software via singularity $ snakemake -p --use-singularity --use-conda --cores 1 --jobs 1 --default-resource=mem_mb=10000 --latency-wait 120 +Other workflows +******************** When executing the workflow, Snakemake will automatically find the main Snakefile in the workflow subfolder which is the **Raw Sequence Read Data** module. However, there are other Snakefiles that are specific to the other Modules that you will have to call using ``--snakefile [desired module snakefile]`` @@ -277,3 +279,13 @@ This example bewlow is for the `Stored Sequence Read Data