diff --git a/docs/getting_started/docker.rst b/docs/getting_started/docker.rst index aad0056..48fe03a 100644 --- a/docs/getting_started/docker.rst +++ b/docs/getting_started/docker.rst @@ -95,13 +95,16 @@ Here is a link for token_ information and creation_. .. code-block:: console + $ cd ../../ $ cd External_SSD + $ ls + $ cd # Mine happens to be Tyche, thus, cd Tyche $ git clone https://github.com/ncherric/Iliad.git $ cd Iliad Now, there should be an ``./Iliad`` directory cloned into your ``/path/to/project/`` like such ``/path/to/project/Iliad/``. -And your current working directory should be ``/path/to/project/Iliad/``. +And your current working directory should be ``/path/to/project/Iliad/``. Mine happens to be ``/External_SSD/Tyche/Iliad/``. Two important folders found in the Iliad directory are **workflow** and **config**. The ``workflow`` contains rules and scripts that a designated Snakefile in Iliad call on to run a specific module.