From 654834701e8207f4f36bc453ddfae36933686369 Mon Sep 17 00:00:00 2001 From: Noah Date: Fri, 25 Aug 2023 15:10:43 -0400 Subject: [PATCH] liftover config edit --- workflow/rules/liftoverTo37.smk | 2 +- workflow/rules/liftoverTo38.smk | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/workflow/rules/liftoverTo37.smk b/workflow/rules/liftoverTo37.smk index 39b4dfd..3e40cfe 100644 --- a/workflow/rules/liftoverTo37.smk +++ b/workflow/rules/liftoverTo37.smk @@ -63,7 +63,7 @@ rule final_liftover: output: liftedVCF="data/liftover/{version}/liftedOver.{name}.vcf", params: - refAssemblyVersion=config['Liftover']['desiredVersion'], + refAssemblyVersion=config['LiftoverSub']['desiredVersion'], shell: """ mkdir -p data/liftover/{params.refAssemblyVersion} diff --git a/workflow/rules/liftoverTo38.smk b/workflow/rules/liftoverTo38.smk index 9919c84..6c747df 100755 --- a/workflow/rules/liftoverTo38.smk +++ b/workflow/rules/liftoverTo38.smk @@ -84,7 +84,7 @@ rule final_liftover: output: liftedVCF="data/liftover/{version}/liftedOver.{name}.vcf", params: - refAssemblyVersion=config['Liftover']['desiredVersion'], + refAssemblyVersion=config['LiftoverSub']['desiredVersion'], shell: """ mkdir -p data/liftover/{params.refAssemblyVersion}