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add script to run shovill on a folder of wgs reads

jinfinancepushed 1 commit to dev • 464a97d…020d1c6 • 
on Aug 12

put in a check for not_match_primer_list.pop()

jinfinancecreated dev • 464a97d • 
on Apr 30

help script to filter fasta file by matching part of the seqid

jinfinancepushed 1 commit to master • e5729ae…ca91cb2 • 
on Apr 23

updating gitignore

uel3pushed 1 commit to UnO_params • 816209b…2270b6e • 
on Sep 29, 2023

updating gitignore

uel3pushed 1 commit to UnO_params • b194e27…816209b • 
on Sep 29, 2023

updating gitignore

uel3pushed 1 commit to UnO_params • 154e98a…b194e27 • 
on Sep 29, 2023

Adding draft of UnO primer worflow

uel3pushed 1 commit to UnO_params • 07917fd…154e98a • 
on Sep 28, 2023

gitignore update

uel3pushed 1 commit to UnO_params • 9d9ec01…07917fd • 
on Sep 28, 2023

updating extract_primers to refelect UnO

uel3pushed 1 commit to UnO_params • 5a1a5b5…9d9ec01 • 
on Sep 28, 2023

updated gitignore

uel3pushed 1 commit to UnO_params • f45844d…5a1a5b5 • 
on Sep 28, 2023

updated gitignore to remove files

uel3pushed 1 commit to UnO_params • 23f2849…f45844d • 
on Sep 28, 2023

count_table could be in temp folder

uel3pushed 1 commit to UnO_params • 387c123…23f2849 • 
on Sep 28, 2023

Update extract_amplicon_from_primersearch_output.py

uel3pushed 1 commit to UnO_params • e5729ae…387c123 • 
on Aug 22, 2023

scripts to draw histogram for primer counts (Jo)

uel3created UnO_params • e5729ae • 
on Aug 22, 2023

Deleted branch

uel3deleted UnO_parameters • 
on Aug 22, 2023

scripts to draw histogram for primer counts (Jo)

uel3created UnO_parameters • e5729ae • 
on Aug 22, 2023

scripts to draw histogram for primer counts (Jo)

jinfinancepushed 1 commit to master • 6475348…e5729ae • 
on Jun 15, 2023

count_table could be in temp folder

jinfinancepushed 1 commit to master • 7dcb729…6475348 • 
on Jun 12, 2023

typo/updates

jinfinancepushed 1 commit to master • 4bd615c…7dcb729 • 
on Apr 20, 2023

confusion matrix script now takes a config file as the only argument;…

jinfinancepushed 1 commit to master • 5c68776…4bd615c • 
on Apr 20, 2023

instruction for generating subset of raw reads

jinfinancepushed 1 commit to master • 46d8c7b…5c68776 • 
on Mar 21, 2023

nextflow scripts to create a subset of raw reads based on a subset of…

jinfinancepushed 1 commit to master • 4fa80fe…46d8c7b • 
on Mar 21, 2023

retrieve gene sequence from their amplicon sequence

jinfinancepushed 1 commit to master • 9ca005b…4fa80fe • 
on Mar 15, 2023