Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

What's the difference between 'common' and 'somatic' SVs? #42

Open
yhx-tj opened this issue Jan 12, 2020 · 0 comments
Open

What's the difference between 'common' and 'somatic' SVs? #42

yhx-tj opened this issue Jan 12, 2020 · 0 comments

Comments

@yhx-tj
Copy link

yhx-tj commented Jan 12, 2020

Hi, I can see that pathogenic structural variations come from Clinvar, but what are common and somatic types of SVs?

How to understand 'variant calls are from germline samples only (no somatic)'?

And how can I get the actual breakpoints of each structural variation? Is it possible to know whether identical variant calls were derived from different individuals or from the same sample but as a result of different analyses?

Thanks!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant