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.gitignore
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### VisualStudioCode ###
.vscode/*
.vscode/**/*
.vscode/
!.vscode/settings.json
!.vscode/tasks.json
!.vscode/launch.json
!.vscode/extensions.json
### VisualStudioCode Patch ###
# Ignore all local history of files
**/.history
# End of https://www.gitignore.io/api/visualstudiocode
personal-config.ini
archive/*
RDAS_CTKG/src/full_trial_data/
RDAS_CTKG/src/chromedriver
RDAS_CTKG/src/ctgov_nctids.json
RDAS_CTKG/src/ctgov_webscraped_names.csv
RDAS_CTKG/src/all_queries/
RDAS_CTKG/src/metamap_cond.txt
RDAS_CTKG/src/metamap_gard.txt
RDAS_CTKG/src/metamap_cond_out.json
RDAS_CTKG/src/*.csv
RDAS_CTKG/src/*.json
RDAS_CTKG/src/*.txt
RDAS_CTKG/archive/
__pycache__/
RDAS_CTKG/__pycache__/
RDAS_GFKG/__pycache__/
RDAS_PAKG/__pycache__/
RDAS_PAKG/init_new.py
RDAS_PAKG/methods_new.py
RDAS_PAKG/archive/
RDAS_GFKG/archive/
RDAS_CTKG/__pycache__/
email/__pycache__/
transfer/*.dump
transfer/*.dump
backup/*/*.dump
migrated/*.dump
approved/*.dump
RDAS_GFKG/src/processed/**/*.csv
RDAS_GFKG/src/processed/**/*.json
RDAS_GFKG/src/processed/**/*.zip
RDAS_GFKG/src/raw/**/*.csv
RDAS_GFKG/src/raw/**/*.json
RDAS_GFKG/src/raw/**/*.zip
RDAS_GFKG/J_GARD_master.csv
RDAS_GFKG/FineTunned_Bert_2.pt
grant_2024/src/**/**/*.csv
grant_2024/src/**/**/*.json
crt/*.json
removethis.py
start_dev.out
start_test.out
start_prod.out
adapt_gard.py
update_clinical.out
update_pubmed.txt
langchain_test.py
langchain.out
rdas_condition.txt
dateyearadd.py
dateadd.txt
removeepi.py
apitest.py
chatgpt.py
add_investigator.out
add_omim.out
investigator_add.py
update_pubtator.txt
update_epi.txt
epi_extract_text.py
dummy_trainer
convert_organization.txt
add_outcome.txt
add_participant_info.py
add_participant.txt
epifix.py
grant_pipeline.txt
result.json
RDAS_PAKG/test_affiliation.py
RDAS_PAKG/test_genereview.py
test_affiliation.txt
logs/
terms_mapped.csv
terms_unmapped.csv
test_term_map.py
RDAS_CTKG/src/ids_to_add.csv
RDAS_CTKG/src/ids_to_update.csv
RDAS_CTKG/src/ids_to_update_confirmed.csv
GARD_disease_classification.csv
gather_grant_funding_remove.py
grant_funding_rdas.csv
fixyear.py
fixpubmedapi.py
config.ini
Cluster 7.csv
codecamp.py
cluster_trials.csv
fixpubmedapi.py
gather_grant_funding_remove.py
grant_funding_rdas.csv
thingforyanji.py
deliverablesyanji
NCATS COLLABORATION
allennlp
meta_annotate.py
genereviews_epi.csv
genereviews_epi_processed.csv
fix_pubtator_type.py
etc
RDAS_GFKG/src/FineTunned_Bert_2.pt
RDAS_GFKG/src/Finetunned_Bert_2.pt
RDAS_CTKG/eligibility_extraction/
RDAS_CTKG/metamap_cond_out.json
RDAS_CTKG/metamap_cond.txt
RDAS_GFKG/convert_csv_fields.py
fix_normmap_file_sep.py
project_check.py
project_check_missing.csv
project_check_new.csv
project_check_old.csv
RDAS_GARD/clinvarmedgen.py
RDAS_PAKG/ullrich_test.py
RDAS_PAKG/test_nhs.py
RDAS_PAKG/snomed_gather.py
RDAS_PAKG/RareSource_Aliases_to_Pubmed_API.csv
RDAS_PAKG/product9_epi.py
RDAS_PAKG/MissingAbstractPMIDMatch.csv
RDAS_PAKG/medgen_pubmed_lnk.py
RDAS_PAKG/medgen_pubmed_lnk.txt
RDAS_PAKG/ICD10_SNOMED_CT_codes_total_GARD_IDs_unique_list.csv
RDAS_PAKG/ICD10_SNOMED_CT_PUBTYPES.csv
RDAS_PAKG/fill_missing_pubmed.py
RDAS_GFKG/src/J_GARD_master.csv
RDAS_PAKG/src/orphanet_product9_epidemiology.csv
RDAS_PAKG/src/genereviews_pmid.txt
RDAS_PAKG/src/genereviews_pmid_missing.csv
RDAS_PAKG/src/article_to_gard_mappings.csv