README.md

Training an image autoencoder with DIGITS

Table of Contents

• Introduction
• Dataset creation
• Model definition (Torch)
• Model definition (Tensorflow)
• Verification
• Visualization for Tensorflow

Introduction

An image autoencoder may be used to learn a compressed representation of an image. An autoencoder comprises two parts:

• an encoder, which learns a representation of the image, using fewer neurons than the input image
• a decoder, which learns to reconstruct the original input from the compressed representation.

The output layer of the encoder is the input layer of the decoder. This layer can be understood as a bottleneck that constrains the autoencoder to learn a compressed representation of the input. During training, the objective is to minimize the difference between the original input and the reconstructed input.

Dataset Creation

The autoencoder may be created in DIGITS by using a generic dataset and model. To create a generic dataset, DIGITS expects to be provided with a set of LMDB-encoded databases. If you followed the introductory walkthrough on GettingStarted, you should have the MNIST dataset created in DIGITS already and DIGITS will have conveniently created the associated LMDB database and mean image file for you. Click on your MNIST image classification model to display dataset information: this will allow you to find the path to the job directory which includes the train database and mean image file:

In this example the path is /fast-scratch/gheinrich/ws/digits/digits/jobs/20151111-210842-a4ec.

The next step is to create a generic dataset that DIGITS can use to train a generic model on. To this avail, click on New Dataset\Images\Other on the main page:

In the generic dataset creation form you need to provide the paths to the train database .../jobs/20151111-210842-a4ec/train_db and the mean image .../jobs/20151111-210842-a4ec/mean.binaryproto. Other fields can be left blank:

Model creation (Torch)

Now that you have a generic dataset to train on, you may create a generic model by clicking on New Model\Images\Other on the main page:

Select the dataset you just created and under the Custom network tab, select Torch. There you can paste the following network definition:

local autoencoder = nn.Sequential()
autoencoder:add(nn.MulConstant(0.00390625))
autoencoder:add(nn.View(-1):setNumInputDims(3))  -- 1*28*28 -> 784
autoencoder:add(nn.Linear(784,300))
autoencoder:add(nn.ReLU())
autoencoder:add(nn.Linear(300,50))
autoencoder:add(nn.ReLU())
autoencoder:add(nn.Linear(50,300))
autoencoder:add(nn.ReLU())
autoencoder:add(nn.Linear(300,784))
autoencoder:add(nn.View(1,28,28):setNumInputDims(1)) -- 784 -> 1*28*28

function autoencoderLabelHook(input, dblabel)
    -- label is the input
    return input
end

-- return function that returns network definition
return function(params)
    return {
        model = autoencoder,
        loss = nn.MSECriterion(),
        trainBatchSize = 64,
        validationBatchSize = 100,
        labelHook = autoencoderLabelHook,
    }
end

This is the definition of a simple linear autoencoder which learns to compress an input of 784 nodes into a layer of just 50 nodes. Note how the model is symmetrically defined, with the encoder and decoder at opposite sides of the smallest layer of 50 nodes.

Since this is unsupervised training, a hook is required to tell DIGITS what to compare the network output against: here we are just setting the target label to be equal to the input image through this function:

function autoencoderLabelHook(input, dblabel)
    -- label is the input
    return input
end

We are using the MSE loss criterion in order to minimize the difference between the input and the reconstructed image.

After training for 30 epochs the loss function should look similar to this:

Model creation (Tensorflow)

The following example was made using TensorFlow-Slim. However you can also do this in vanilla Tensorflow and Keras

Select the dataset you just created and under the Custom network tab, select Tensorflow. There you can paste the following network definition:

# Tensorflow MNIST autoencoder model using TensorFlow-Slim
# The format of the data in this example is: batch_size * height * width * channel
class UserModel(Tower):

    @model_property
    def inference(self):

        with slim.arg_scope([slim.fully_connected],
                            weights_initializer=tf.contrib.layers.xavier_initializer(),
                            weights_regularizer=slim.l2_regularizer(0.0005) ):
            const = tf.constant(0.00390625)
            model = tf.multiply(self.x, const)
            model = tf.reshape(model, shape=[-1, 784]) # equivalent to `model = slim.flatten(_x)`
            model = slim.fully_connected(model, 300, scope='fc1')
            model = slim.fully_connected(model, 50, scope='fc2')
            model = slim.fully_connected(model, 300, scope='fc3')
            model = slim.fully_connected(model, 784, activation_fn=None, scope='fc4')
            model = tf.reshape(model, shape=[-1, self.input_shape[0], self.input_shape[1], self.input_shape[2]])

        # The below image summary makes it very easy to review your result
        tf.summary.image(self.x.op.name, self.x, max_outputs=5, collections=['summaries'])
        tf.summary.image(model.op.name, model, max_outputs=5, collections=['summaries'])

        return model

    @model_property
    def loss(self):
        return digits.mse_loss(self.inference, self.x)

The result from running the Tensorflow example should produce results that are similar to Torch.

Verification

Now we can assess the quality of the autoencoder. On the model page, select an image from the MNIST test set (one that the network has never seen during training) and enable network visualizations then click Test One:

A new window will appear showing the original image:

The normalized image after mean subtraction and scaling (this is the image that the network will try to reconstruct):

The compressed representation of the image (50 nodes out of the original 784 nodes):

The reconstructed image, which looks similar to the normalized image:

Visualization for Tensorflow

To visualize the result of the autoencoder in Tensorflow properly, select Image output as Visualization method. Then select HWC as the Data order.

Then follow the instructions for verification