diff --git a/CHANGELOG.md b/CHANGELOG.md index 03737e2..81e4382 100755 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -4,9 +4,23 @@ All notable changes to this project will be documented in this file. The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). -## [unreleased] +## [v1.11.0] ### Fixed - Correct suffix of consensus file when `medaka_consensus` outputs a fastq. +### Added +- Choice of model file can be introspected from input files. For BAM files the + read group (RG) headers are searched according to the dorado + [specification](https://github.com/nanoporetech/dorado/blob/master/documentation/SAM.md), + whilst for .fastq files the comment section of a number of reads are checked + for corresponding read group information. In the latter case see README for + information on correctly converting basecaller output to .fastq whilst + maintaining the relevant meta information. +- `medaka tools resolve_model` can display the model that would automatically + be used for a given input file. +### Changed +- If no model is provided on command-line interface (medaka consensus, + medaka_consensus, and medaka_haploid_variant) automatic attempts will be made + to choose the appropriate model. ## [v1.10.0] ### Changed diff --git a/medaka/__init__.py b/medaka/__init__.py index b387597..5573f60 100755 --- a/medaka/__init__.py +++ b/medaka/__init__.py @@ -5,7 +5,7 @@ import subprocess import sys -__version__ = "1.10.0" +__version__ = "1.11.0" try: import pyabpoa as abpoa