From c837e9b2df28ec4d7d51c98d81174157f9657558 Mon Sep 17 00:00:00 2001 From: "Davi Marcon (@mxrcon)" Date: Tue, 5 Apr 2022 22:59:06 -0300 Subject: [PATCH] adding `gatk_jar_link` to global params --- conf/global_params.config | 2 ++ 1 file changed, 2 insertions(+) diff --git a/conf/global_params.config b/conf/global_params.config index 6b06b20..199ecd2 100644 --- a/conf/global_params.config +++ b/conf/global_params.config @@ -27,6 +27,8 @@ cohort_tsv = "${params.project}_cohort.tsv" gatk38_jar = "${projectDir}/resources/GenomeAnalysisTK-3.8-0-ge9d806836/GenomeAnalysisTK.jar" +gatk_jar_link = "https://storage.googleapis.com/gatk-software/package-archive/gatk/GenomeAnalysisTK-3.8-0-ge9d806836.tar.bz2" + //NOTE: Setting this OPTION will skip all filtering steps and report the calculated information for all positions in the input file. // The all_vars only needs to be activated in MTBseq. But in mtbseq-nf we'll specify it as false all_vars = false