Merge pull request #66 from mtb-bioinformatics/mxrcon/fix-remove-cahce-samples.tsv

[Fix] Preventing workflows from caching the `samples.tsv` for cohort steps

Author: abhi18av

workflows/batch_analysis.nf

@@ -19,7 +19,7 @@ workflow BATCH_ANALYSIS {
                 .collect()
                 .flatten()
                 .map { n -> "$n" + "\t" + "${params.library_name}" + "\n" }
-                .collectFile(name: params.cohort_tsv, newLine: false, storeDir: "${params.outdir}")
+                .collectFile(name: params.cohort_tsv, newLine: false, storeDir: "${params.outdir}", cache: false)
 
         RENAME_FILES(reads_ch)
 

workflows/cohort_analysis.nf

@@ -15,7 +15,7 @@ workflow COHORT_ANALYSIS {
         samples_tsv_file = genome_names
                 .collect()
                 .flatten().map { n -> "$n" + "\t" + "${params.library_name}" + "\n" }
-                .collectFile(name: params.cohort_tsv, newLine: false, storeDir: "${params.outdir}")
+                .collectFile(name: params.cohort_tsv, newLine: false, storeDir: "${params.outdir}", cache: false)
 
         TBJOIN(position_variants.collect(),
                position_tables.collect(),