added cran comments

Author: muschellij2

.Rbuildignore

@@ -38,3 +38,4 @@ docs/*
 ^R/probtrackx2\.R$
 ^\.github$
 ^inst/extdata/example_dwi\.zip$
+^CRAN-SUBMISSION$

CRAN-SUBMISSION

@@ -0,0 +1,3 @@
+Version: 2.25.2
+Date: 2022-08-25 14:49:04 UTC
+SHA: 53276dfb7920de666b4846d9d8fb05f05aad4704

DESCRIPTION

@@ -2,7 +2,7 @@ Package: fslr
 Type: Package
 Title: Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI
     of the Brain ('FMRIB')
-Version: 2.25.2
+Version: 2.25.3
 Authors@R: c(person(given = "John",
            family = "Muschelli",
            email = "[email protected]",
@@ -35,4 +35,4 @@ Suggests:
 BugReports: https://github.com/muschellij2/fslr/issues
 SystemRequirements: FSL
 Encoding: UTF-8
-RoxygenNote: 7.2.1
+RoxygenNote: 7.3.1

NEWS.md

@@ -1,3 +1,7 @@
+# fslr 2.25.3
+
+- Updated docs for `neurobase`
+
 # fslr 2.25.2
 
 - Pushing back to CRAN after `neurobase` is back on.

R/fsl_cluster.R

@@ -23,14 +23,14 @@
 #'
 #' @return A list of filenames of outputs and tables:
 #' \itemize{
-#' \item{\code{opvals}}{filename for image output of log pvals}
-#' \item{\code{oindex}}{filename for output of cluster index (in size order)}
-#' \item{\code{othresh}}{filename for output of thresholded image}
-#' \item{\code{olmax}}{filename for output of local maxima text file}
-#' \item{\code{olmaxim}}{filename for output of local maxima volume}
-#' \item{\code{osize}}{filename for output of size image}
-#' \item{\code{omax}}{filename for output of max image}
-#' \item{\code{omean}}{filename for output of mean image}
+#' \item \code{opvals} filename for image output of log pvals
+#' \item \code{oindex} filename for output of cluster index (in size order)
+#' \item \code{othresh} filename for output of thresholded image
+#' \item \code{olmax} filename for output of local maxima text file
+#' \item \code{olmaxim} filename for output of local maxima volume
+#' \item \code{osize} filename for output of size image
+#' \item \code{omax} filename for output of max image
+#' \item \code{omean} filename for output of mean image
 #' }
 #' 
 #' @export

R/rpi_orient.R

@@ -26,9 +26,9 @@
 #' @param verbose print diagnostic messages
 #' @return List of 3 elements
 #' \itemize{
-#' \item{\code{img}: }{Reoriented image of class \code{nifti}}
-#' \item{\code{convention}: }{Convention (Neurological/Radiological) of original image}
-#' \item{\code{orientation}: }{Original image orientations}
+#' \item \code{img}: Reoriented image of class \code{nifti}
+#' \item \code{convention}: Convention (Neurological/Radiological) of original image
+#' \item \code{orientation}: Original image orientations
 #' }
 #' @export
 #' @note `orient_rpi` and `orient_rpi_file` uses `RNifti` to ensure the 

cran-comments.md

@@ -6,5 +6,4 @@
 ---
 This is a re-upload (with new version number) 
 after the neurobase package fixes were pushed, which were affected because of 
-oro.nifti and length-1 issues. neurobase is now back on CRAN, so this 
-upload should pass R CMD check.
+documentation issues