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abbreviations.tex
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abbreviations.tex
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\chapter*{List of Abbreviations}
\begin{longtable}{L{3cm}L{7cm}} \\
ACC & Adrenocortical carcinoma \\
ALL & Acute Lymphoblastic Leukaemia \\
ANOVA & Analysis of Variance \\
ARACNE & Accurate Reconstruction of Cellular Networks \\
BLCA & Bladder Urothelial Carcinoma \\
BRCA & Breast invasive carcinoma \\
CESC & Cervical squamous cell carcinoma and endocervical adenocarcinoma \\
CCLE & Cancer Cell Line Encyclopedia \\
ChIP-seq & Chromatin Immunoprecipitation sequencing \\
COAD & Colon adenocarcinoma \\
COREAD & Colon and rectum adenocarcinoma \\
CRAN & Comprehensive R Archive Network \\
DLBC & Lymphoid Neoplasm Diffuse Large B-cell Lymphoma \\
ESCA & Esophageal carcinoma \\
GBM & Glioblastoma multiforme \\
GSEA & Gene Set Enrichment Analysis \\
GC & Gas Chromatography \\
GDSC & Genomics of Drug Sensitivity in Cancer \\
GO & Gene Ontology \\
HGNC & Human Gene Nomenclature Consortium \\
HNSC & Head and Neck squamous cell carcinoma \\
HPLC & High Performance Liquid Chromatography \\
ICGC & International Cancer Genome Consortium \\
KEGG & Kyoto Encyclopedia of Genes and Genomes \\
KIRC & Kidney renal clear cell carcinoma \\
LAML & Acute Myeloid Leukemia \\
LGG & Brain Lower Grade Glioma \\
LIHC & Liver hepatocellular carcinoma \\
LINCS & Library of Integrated Network-Based Cellular Signatures \\
LPS & Lipopolysaccharide \\
LUAD & Lung adenocarcinoma \\
LUSC & Lung squamous cell carcinoma \\
MEME & Multiple EM for Motif Elicitation \\
MIAME & Minimum Information Required in the Annotation of Microarray Experiments \\
MINDy & Modulator Inference by Network Dynamics \\
mRNA & Messenger RNA \\
NMF & Non-negative Matrix Factorisation \\
OV & Ovarian serous cystadenocarcinoma \\
PAAD & Pancreatic adenocarcinoma \\
PARADIGM & PAthway Representation and Analysis by Direct Reference on Graphical Models \\
PCA & Principal Component Analysis \\
PolII & DNA-dependent RNA polymerase (Polymerase II) \\
PRAD & Prostate adenocarcinoma \\
PRL & Prototype Ranked List \\
PTM & Post-translational modification \\
PyPI & Python Packaging Index \\
READ & Rectum adenocarcinoma \\
RNA & Ribonucleic Acid \\
SKCM & Skin Cutaneous Melanoma \\
SPEED & Signaling Pathway Enrichment using Experimental Data sets \\
SPIA & Signaling Pathway Impact Analysis \\
SNP & Single Nucleotide Polymorphism \\
STAD & Stomach adenocarcinoma \\
SQLite & Structured Query Language file-based database implementation \\
SVD & Singular Value Decomposition \\
TCGA & The Cancer Genome Atlas \\
THCA & Thyroid carcinoma \\
TOF & Time of Flight \\
t-SNE & T-distrubuted Stochastic Neighbor Embedding \\
UCEC & Uterine Corpus Endometrial Carcinoma \\
VCS & Version Control System \\
YAML & Yet Another Markup Language \\
\end{longtable}