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Extend CNV tool support in assign_cn_to_ssm #194

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Kdreval opened this issue May 4, 2023 · 0 comments
Open

Extend CNV tool support in assign_cn_to_ssm #194

Kdreval opened this issue May 4, 2023 · 0 comments

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@Kdreval
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Kdreval commented May 4, 2023

The function assign_cn_to_ssm currently only works with battenberg outputs. As we now have merges available for all the things, it needs to be reorganized to support other CNV callers. In addition, the seg file should be obtained through the get_sample_cn_segments instead of reading individual file from its location on the drive.
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@mattssca @Kdreval