pyproject.toml

[build-system]
requires = ["hatchling", "hatch-fancy-pypi-readme"]
build-backend = "hatchling.build"

[project]
name = "flopy"
description = "FloPy is a Python package to create, run, and post-process MODFLOW-based models"
authors = [
    {name = "FloPy Team", email = "modflow@usgs.gov"},
]
maintainers = [
    {name = "Joseph D. Hughes", email = "jdhughes@usgs.gov"},
]
keywords = ["MODFLOW", "groundwater", "hydrogeology"]
license = {text = "CC0"}
classifiers = [
    "Development Status :: 5 - Production/Stable",
    "Intended Audience :: Science/Research",
    "License :: CC0 1.0 Universal (CC0 1.0) Public Domain Dedication",
    "Programming Language :: Python :: 3 :: Only",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: 3.13",
    "Topic :: Scientific/Engineering :: Hydrology",
]
requires-python = ">=3.9"
dependencies = [
    "numpy>=1.20.3",
    "matplotlib >=1.4.0",
    "pandas >=2.0.0"
]
dynamic = ["version", "readme"]

[project.optional-dependencies]
dev = ["flopy[lint,test,optional,doc]", "tach"]
lint = ["ruff"]
test = [
    "flopy[lint]",
    "coverage !=7.6.5",
    "flaky",
    "filelock",
    "jupyter",
    "jupyter_client >=8.4.0", # avoid datetime.utcnow() deprecation warning
    "jupytext",
    "modflow-devtools",
    "pytest !=8.1.0",
    "pytest-benchmark",
    "pytest-cov",
    "pytest-dotenv",
    "pytest-xdist",
    "pyzmq >=25.1.2",
    "syrupy",
    "virtualenv"
]
optional = [
    "affine",
    "descartes",
    "fiona",
    "geojson",
    "geopandas",
    "GitPython",
    "imageio",
    "netcdf4",
    "pooch",
    "pymetis ; platform_system != 'Windows'",
    "pyproj",
    "pyshp",
    "pyvista",
    "rasterio",
    "rasterstats",
    "scipy",
    "shapely >=2.0",
    "vtk >=9.4.0",
    "xmipy",
]
doc = [
    "flopy[optional]",
    "ipython[kernel]",
    "jupytext",
    "myst-parser",
    "nbconvert <7.14.0",
    "nbsphinx",
    "PyYAML",
    "rtds-action",
    "sphinx ==7.1.2",
    "sphinx-rtd-theme >=1",
]

[project.scripts]
get-modflow = "flopy.utils.get_modflow:cli_main"

[project.urls]
Documentation = "https://flopy.readthedocs.io"
"Release Notes" = "https://github.com/modflowpy/flopy/blob/develop/docs/version_changes.md"
"Bug Tracker" = "https://github.com/modflowpy/flopy/issues"
"Source Code" = "https://github.com/modflowpy/flopy"

[tool.hatch.build.targets.sdist]
only-include = [
    "CITATION.cff",
    "README.md",
    "docs",
    "flopy",
]

[tool.hatch.build.targets.wheel]
packages = ["flopy"]

[tool.hatch.metadata.hooks.fancy-pypi-readme]
content-type = "text/markdown"

[[tool.hatch.metadata.hooks.fancy-pypi-readme.fragments]]
path = "docs/PyPI_release.md"

[[tool.hatch.metadata.hooks.fancy-pypi-readme.fragments]]
path = "LICENSE.md"

[tool.hatch.version]
path = "flopy/version.py"

[tool.ruff]
line-length = 88
include = [
    "pyproject.toml",
    "flopy/**/*.py",
    "autotest/**/*.py",
    "examples/**/*.py",
    "scripts/**/*.py",
    ".docs/**/*.py",
]
extend-include = [
    "examples/**/*.ipynb"
]

[tool.ruff.format]
exclude = [
    "flopy/mf6/**/*.py",
]

[tool.ruff.lint]
select = [
    "C4",   # flake8 comprehensions
    "D409", # pydocstyle - section-underline-matches-section-length
    "E",    # pycodestyle error
    "F",    # Pyflakes
    "I001", # isort - unsorted-imports
    # "ISC001",  # implicitly concatenated string literals
    "RUF",  # Ruff-specific rules
]
ignore = [
    "E402", # module level import not at top of file
    "E712", # Avoid equality comparisons to `True`
    "E722", # do not use bare `except`
    "E721", # use `is`/`is not` for type comparisons
    "E741", # ambiguous variable name
    "F401", # unused import
    "F403", # unable to detect undefined names (star imports)
    "F524", # `.format` missing argument(s) for placeholder(s)
    "F811", # Redefinition of unused variable
    "F841", # local variable assigned but never used
    "RUF005", # collection literal concatenation
    "RUF012", # mutable class default
    "RUF017", # quadratic-list-summation
]

[tool.ruff.lint.per-file-ignores]
".docs/**/*.py" = ["E501"]
"flopy/mf6/**/*.py" = ["C4", "E", "F", "ISC", "RUF"]

[tool.codespell]
skip = "cliff.toml,./examples/data/*,./autotest/test_modeltime.py"
ignore-words-list = [
    "alltime",
    "dum",
    "inout",
    "intot",
    "delt",
    "gage",
    "gages",
    "datbase",
    "wel",
    "nam",
    "lke",
    "ist",
    "ninj",
    "drob",
    "thck",
    "vor",
    "yur",
    "localy",
    "vertx",
    "nd",
]