-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathNAMESPACE
128 lines (127 loc) · 3.62 KB
/
NAMESPACE
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
# Generated by roxygen2: do not edit by hand
S3method(exclude_anatomy,mouse)
S3method(exclude_anatomy,slice)
S3method(get_registered_volumes,mouse)
S3method(get_registered_volumes,slice)
S3method(import_segmentation_custom,mouse)
S3method(import_segmentation_custom,slice)
S3method(import_segmentation_ij,mouse)
S3method(import_segmentation_ij,slice)
S3method(make_segmentation_object,mouse)
S3method(make_segmentation_object,slice)
S3method(map_cells_to_atlas,mouse)
S3method(map_cells_to_atlas,slice)
S3method(print,correlation_list)
S3method(print,experiment)
S3method(print,mouse)
S3method(print,slice)
S3method(register,mouse)
S3method(register,slice)
export(add_mouse)
export(add_slice)
export(adjust_brain_outline)
export(check_ontology_coding)
export(check_redundant_parents)
export(combine_cell_counts)
export(correlation_diff_permutation)
export(create_joined_networks)
export(create_networks)
export(enough_mice_per_group)
export(exclude_anatomy)
export(exclude_by_acronym)
export(exclude_by_keyword)
export(exclude_redundant_regions)
export(experiment)
export(export_permutation_results)
export(filter_regions)
export(find_outlier_counts)
export(get_cell_table)
export(get_correlations)
export(get_percent_colabel)
export(get_registered_volumes)
export(import_mapped_datasets)
export(import_segmentation_custom)
export(import_segmentation_ij)
export(make_segmentation_object)
export(map_cells_to_atlas)
export(mouse)
export(normalize_cell_counts)
export(normalize_colabel_counts)
export(parallel_coordinate_plot)
export(plot_betweenness_regions)
export(plot_correlation_heatmaps)
export(plot_degree_distributions)
export(plot_degree_regions)
export(plot_joined_networks)
export(plot_mean_between_centrality)
export(plot_mean_clust_coeff)
export(plot_mean_degree)
export(plot_mean_global_effic)
export(plot_networks)
export(plot_normalized_counts)
export(plot_percent_colabel)
export(read_check_file)
export(register)
export(reset_mouse_root)
export(rewire_network)
export(save_experiment)
export(save_mouse)
export(sem)
export(simplify_by_keywords)
export(simplify_cell_count)
export(simplify_vec_by_keywords)
export(slice)
export(summarise_networks)
export(summarize_null_networks)
export(volcano_plot)
importFrom(dplyr,across)
importFrom(dplyr,arrange)
importFrom(dplyr,desc)
importFrom(dplyr,group_by)
importFrom(dplyr,if_else)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,summarise)
importFrom(dplyr,summarize)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_col)
importFrom(ggplot2,geom_errorbar)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_jitter)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,labs)
importFrom(ggplot2,position_nudge)
importFrom(ggplot2,scale_fill_gradient2)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,unit)
importFrom(ggplot2,xlab)
importFrom(ggplot2,xlim)
importFrom(ggplot2,ylab)
importFrom(ggplot2,ylim)
importFrom(grDevices,dev.new)
importFrom(magrittr,"%>%")
importFrom(rlang,.data)
importFrom(stats,na.omit)
importFrom(stats,sd)
importFrom(tidygraph,activate)
importFrom(tidygraph,convert)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,pivot_wider)
importFrom(tidyselect,all_of)
importFrom(tidyselect,any_of)
importFrom(tidyselect,last_col)
importFrom(utils,read.csv)
importFrom(utils,write.csv)