diff --git a/tools/ci_build/github/azure-pipelines/stages/py-cpu-packaging-stage.yml b/tools/ci_build/github/azure-pipelines/stages/py-cpu-packaging-stage.yml
index 6a1f0ef464df0..dbe576def338f 100644
--- a/tools/ci_build/github/azure-pipelines/stages/py-cpu-packaging-stage.yml
+++ b/tools/ci_build/github/azure-pipelines/stages/py-cpu-packaging-stage.yml
@@ -301,6 +301,23 @@ stages:
         MACHINE_POOL: 'onnxruntime-qnn-windows-vs-2022-arm64'
         QNN_SDK: ${{ parameters.qnn_sdk_version }}
         BUILD_PY_PARAMETERS: ${{ parameters.build_py_parameters }}
+        PYTHON_VERSION: '3.11'
+        is1ES: true
+
+    - template: ../templates/py-win-arm64-qnn.yml
+      parameters:
+        MACHINE_POOL: 'onnxruntime-qnn-windows-vs-2022-arm64'
+        QNN_SDK: ${{ parameters.qnn_sdk_version }}
+        BUILD_PY_PARAMETERS: ${{ parameters.build_py_parameters }}
+        PYTHON_VERSION: '3.12'
+        is1ES: true
+
+    - template: ../templates/py-win-arm64-qnn.yml
+      parameters:
+        MACHINE_POOL: 'onnxruntime-qnn-windows-vs-2022-arm64'
+        QNN_SDK: ${{ parameters.qnn_sdk_version }}
+        BUILD_PY_PARAMETERS: ${{ parameters.build_py_parameters }}
+        PYTHON_VERSION: '3.13'
         is1ES: true
 
 - ${{ if eq(parameters.enable_windows_arm64ec_qnn, true) }}:
diff --git a/tools/ci_build/github/azure-pipelines/templates/py-win-arm64-qnn.yml b/tools/ci_build/github/azure-pipelines/templates/py-win-arm64-qnn.yml
index 185f41822a7e5..05286f232821e 100644
--- a/tools/ci_build/github/azure-pipelines/templates/py-win-arm64-qnn.yml
+++ b/tools/ci_build/github/azure-pipelines/templates/py-win-arm64-qnn.yml
@@ -4,6 +4,10 @@ parameters:
   type: string
   default: 'onnxruntime-qnn-windows-vs-2022-arm64'
 
+- name: PYTHON_VERSION
+  type: string
+  default: '3.11'
+  
 - name: QNN_SDK
   displayName: QNN SDK Version
   type: string
@@ -25,7 +29,7 @@ parameters:
   default: false
 
 jobs:
-- job: Win_py_arm64_qnn_Wheels
+- job: Win_py_arm64_qnn_Wheels_${{ replace(parameters.PYTHON_VERSION,'.','_') }}
   timeoutInMinutes: 210
   workspace:
     clean: all
@@ -33,17 +37,6 @@ jobs:
     name: ${{ parameters.MACHINE_POOL }}
     os: windows
     hostArchitecture: Arm64
-  strategy:
-    matrix:
-      Python311_arm64:
-        PythonVersion: '3.11.0'
-        LocalPythonDir: 'C:\Python\Python311'
-      Python312_arm64:
-        PythonVersion: '3.12.6'
-        LocalPythonDir: 'C:\Python\Python312'
-      Python313_arm64:
-        PythonVersion: '3.13.2'
-        LocalPythonDir: 'C:\Python\Python313'
   variables:
     GRADLE_OPTS: '-Dorg.gradle.daemon=false'
     VSGenerator: 'Visual Studio 17 2022'
@@ -54,18 +47,9 @@ jobs:
 
   - template: telemetry-steps.yml
 
-  - script: |
-      MKDIR $(Agent.ToolsDirectory)\Python\$(PythonVersion)\arm64
-      XCOPY /s /y /h /e /c /q "$(LocalPythonDir)\*.*" $(Agent.ToolsDirectory)\Python\$(PythonVersion)\arm64\
-      COPY NUL $(Agent.ToolsDirectory)\Python\$(PythonVersion)\arm64.complete
-      DIR $(Agent.ToolsDirectory)\Python
-      DIR $(Agent.ToolsDirectory)\Python\$(PythonVersion)
-      DIR $(Agent.ToolsDirectory)\Python\$(PythonVersion)\arm64
-    displayName: Copy python $(PythonVersion) version to agent tools directory
-
   - task: UsePythonVersion@0
     inputs:
-      versionSpec: $(PythonVersion)
+      versionSpec: ${{ parameters.PYTHON_VERSION }}
       addToPath: true
       architecture: 'arm64'
 
@@ -150,13 +134,13 @@ jobs:
     - task: 1ES.PublishPipelineArtifact@1
       displayName: 'Publish Artifact: ONNXRuntime python wheel'
       inputs:
-        artifactName: onnxruntime_qnn_arm64_$(PythonVersion)
+        artifactName: onnxruntime_qnn_arm64_${{ parameters.PYTHON_VERSION }}
         targetPath: '$(Build.ArtifactStagingDirectory)'
   - ${{ if eq(parameters.is1ES, false) }}:
     - task: PublishPipelineArtifact@1
       displayName: 'Publish Artifact: ONNXRuntime python wheel'
       input:
-        artifactName: onnxruntime_qnn_arm64_$(PythonVersion)
+        artifactName: onnxruntime_qnn_arm64_${{ parameters.PYTHON_VERSION }}
         targetPath: '$(Build.ArtifactStagingDirectory)'
 
   - script: |
diff --git a/tools/ci_build/github/azure-pipelines/win-qnn-arm64-ci-pipeline.yml b/tools/ci_build/github/azure-pipelines/win-qnn-arm64-ci-pipeline.yml
index 7ebf5394e4530..66d1cd1687d99 100644
--- a/tools/ci_build/github/azure-pipelines/win-qnn-arm64-ci-pipeline.yml
+++ b/tools/ci_build/github/azure-pipelines/win-qnn-arm64-ci-pipeline.yml
@@ -61,16 +61,6 @@ jobs:
         # because the python bindings also use the USE_<EP>_PROVIDER_INTERFACE preprocessor macros.
         ExtraQnnBuildArgs: '--enable_generic_interface --build_wheel'
   steps:
-
-  - script: |
-      MKDIR $(Agent.ToolsDirectory)\Python\3.11.0\arm64
-      XCOPY /s /y /h /e /c /q "C:\Python\Python311\*.*" $(Agent.ToolsDirectory)\Python\3.11.0\arm64\
-      COPY NUL $(Agent.ToolsDirectory)\Python\3.11.0\arm64.complete
-      DIR $(Agent.ToolsDirectory)\Python
-      DIR $(Agent.ToolsDirectory)\Python\3.11.0
-      DIR $(Agent.ToolsDirectory)\Python\3.11.0\arm64
-    displayName: Copy python 3.11.0 version to agent tools directory
-
   - task: UsePythonVersion@0
     inputs:
       versionSpec: '3.x'