diff --git a/tools/ci_build/github/azure-pipelines/stages/py-cpu-packaging-stage.yml b/tools/ci_build/github/azure-pipelines/stages/py-cpu-packaging-stage.yml
index c1b83c5e579dc..f4a62208059c8 100644
--- a/tools/ci_build/github/azure-pipelines/stages/py-cpu-packaging-stage.yml
+++ b/tools/ci_build/github/azure-pipelines/stages/py-cpu-packaging-stage.yml
@@ -316,7 +316,21 @@ stages:
         MACHINE_POOL: 'onnxruntime-qnn-windows-vs-2022-arm64'
         QNN_SDK: ${{ parameters.qnn_sdk_version }}
         BUILD_PY_PARAMETERS: ${{ parameters.build_py_parameters }}
-        is1ES: true
+        PYTHON_VERSION: '3.11'
+
+    - template: ../templates/py-win-arm64-qnn.yml
+      parameters:
+        MACHINE_POOL: 'onnxruntime-qnn-windows-vs-2022-arm64'
+        QNN_SDK: ${{ parameters.qnn_sdk_version }}
+        BUILD_PY_PARAMETERS: ${{ parameters.build_py_parameters }}
+        PYTHON_VERSION: '3.12'
+
+    - template: ../templates/py-win-arm64-qnn.yml
+      parameters:
+        MACHINE_POOL: 'onnxruntime-qnn-windows-vs-2022-arm64'
+        QNN_SDK: ${{ parameters.qnn_sdk_version }}
+        BUILD_PY_PARAMETERS: ${{ parameters.build_py_parameters }}
+        PYTHON_VERSION: '3.13'
 
 - ${{ if eq(parameters.enable_windows_arm64ec_qnn, true) }}:
   - stage: Python_Packaging_Windows_arm64ec_QNN
@@ -327,7 +341,6 @@ stages:
           MACHINE_POOL: 'Onnxruntime-QNNEP-Windows-2022-CPU'
           QNN_SDK: ${{ parameters.qnn_sdk_version }}
           BUILD_PY_PARAMETERS: ${{ parameters.build_py_parameters }}
-          is1ES: true
 
 - ${{ if eq(parameters.enable_windows_x64_qnn, true) }}:
   - stage: Python_Packaging_Windows_x64_QNN
diff --git a/tools/ci_build/github/azure-pipelines/templates/py-win-arm64-qnn.yml b/tools/ci_build/github/azure-pipelines/templates/py-win-arm64-qnn.yml
index 761c551e9f4d9..3c2ef4741f049 100644
--- a/tools/ci_build/github/azure-pipelines/templates/py-win-arm64-qnn.yml
+++ b/tools/ci_build/github/azure-pipelines/templates/py-win-arm64-qnn.yml
@@ -4,6 +4,10 @@ parameters:
   type: string
   default: 'onnxruntime-qnn-windows-vs-2022-arm64'
 
+- name: PYTHON_VERSION
+  type: string
+  default: '3.11'
+  
 - name: QNN_SDK
   displayName: QNN SDK Version
   type: string
@@ -19,13 +23,8 @@ parameters:
   type: string
   default: ''
 
-- name: is1ES
-  displayName: 'Whether the pipeline is running in 1ES'
-  type: boolean
-  default: false
-
 jobs:
-- job: Win_py_arm64_qnn_Wheels
+- job: Win_py_arm64_qnn_Wheels_${{ replace(parameters.PYTHON_VERSION,'.','_') }}
   timeoutInMinutes: 210
   workspace:
     clean: all
@@ -48,41 +47,21 @@ jobs:
     outputs:
     - output: pipelineArtifact
       targetPath: $(Build.ArtifactStagingDirectory)
-      artifactName: onnxruntime_qnn_arm64_$(PythonVersion)
-
-  strategy:
-    matrix:
-      Python311_arm64:
-        PythonVersion: '3.11.0'
-        LocalPythonDir: 'C:\Python\Python311'
-      Python312_arm64:
-        PythonVersion: '3.12.6'
-        LocalPythonDir: 'C:\Python\Python312'
-      Python313_arm64:
-        PythonVersion: '3.13.2'
-        LocalPythonDir: 'C:\Python\Python313'
+      artifactName: onnxruntime_qnn_arm64_${{ parameters.PYTHON_VERSION }}
+
   variables:
     GRADLE_OPTS: '-Dorg.gradle.daemon=false'
     VSGenerator: 'Visual Studio 17 2022'
   steps:
   - checkout: self
     clean: true
-    submodules: recursive
+    submodules: none
 
   - template: telemetry-steps.yml
 
-  - script: |
-      MKDIR $(Agent.ToolsDirectory)\Python\$(PythonVersion)\arm64
-      XCOPY /s /y /h /e /c /q "$(LocalPythonDir)\*.*" $(Agent.ToolsDirectory)\Python\$(PythonVersion)\arm64\
-      COPY NUL $(Agent.ToolsDirectory)\Python\$(PythonVersion)\arm64.complete
-      DIR $(Agent.ToolsDirectory)\Python
-      DIR $(Agent.ToolsDirectory)\Python\$(PythonVersion)
-      DIR $(Agent.ToolsDirectory)\Python\$(PythonVersion)\arm64
-    displayName: Copy python $(PythonVersion) version to agent tools directory
-
   - task: UsePythonVersion@0
     inputs:
-      versionSpec: $(PythonVersion)
+      versionSpec: ${{ parameters.PYTHON_VERSION }}
       addToPath: true
       architecture: 'arm64'
 
diff --git a/tools/ci_build/github/azure-pipelines/templates/py-win-arm64ec-qnn.yml b/tools/ci_build/github/azure-pipelines/templates/py-win-arm64ec-qnn.yml
index 74cae38393ea6..c8d37457a1034 100644
--- a/tools/ci_build/github/azure-pipelines/templates/py-win-arm64ec-qnn.yml
+++ b/tools/ci_build/github/azure-pipelines/templates/py-win-arm64ec-qnn.yml
@@ -19,11 +19,6 @@ parameters:
   type: string
   default: ''
 
-- name: is1ES
-  displayName: 'Whether the pipeline is running in 1ES'
-  type: boolean
-  default: false
-
 jobs:
 - job: Win_py_x64_qnn_Wheels
   timeoutInMinutes: 210
diff --git a/tools/ci_build/github/azure-pipelines/win-qnn-arm64-ci-pipeline.yml b/tools/ci_build/github/azure-pipelines/win-qnn-arm64-ci-pipeline.yml
index 7ebf5394e4530..66d1cd1687d99 100644
--- a/tools/ci_build/github/azure-pipelines/win-qnn-arm64-ci-pipeline.yml
+++ b/tools/ci_build/github/azure-pipelines/win-qnn-arm64-ci-pipeline.yml
@@ -61,16 +61,6 @@ jobs:
         # because the python bindings also use the USE_<EP>_PROVIDER_INTERFACE preprocessor macros.
         ExtraQnnBuildArgs: '--enable_generic_interface --build_wheel'
   steps:
-
-  - script: |
-      MKDIR $(Agent.ToolsDirectory)\Python\3.11.0\arm64
-      XCOPY /s /y /h /e /c /q "C:\Python\Python311\*.*" $(Agent.ToolsDirectory)\Python\3.11.0\arm64\
-      COPY NUL $(Agent.ToolsDirectory)\Python\3.11.0\arm64.complete
-      DIR $(Agent.ToolsDirectory)\Python
-      DIR $(Agent.ToolsDirectory)\Python\3.11.0
-      DIR $(Agent.ToolsDirectory)\Python\3.11.0\arm64
-    displayName: Copy python 3.11.0 version to agent tools directory
-
   - task: UsePythonVersion@0
     inputs:
       versionSpec: '3.x'