wc: rename clonical variant review component

Author: imedina

src/core/webcomponents/variant/interpretation/opencga-interpretation-variant-review.js src/core/webcomponents/clinical/clinical-interpretation-variant-review.js

@@ -15,10 +15,10 @@
  */
 
 import {LitElement, html} from "/web_modules/lit-element.js";
-import UtilsNew from "../../../utilsNew.js";
+import UtilsNew from "../../utilsNew.js";
 
 
-export default class OpencgaInterpretationVariantReview extends LitElement {
+export default class ClinicalInterpretationVariantReview extends LitElement {
 
     constructor() {
         super();
@@ -48,20 +48,17 @@ export default class OpencgaInterpretationVariantReview extends LitElement {
     _init(){
         this._prefix = UtilsNew.randomString(8);
 
-        this.mode = "form";
         this.updateParams = {};
+        this.mode = "form";
     }
 
     updated(changedProperties) {
-        if (changedProperties.has("variant")) {
-            this.variantObserver();
-        }
+        // if (changedProperties.has("variant")) {
+        //     this.variantObserver();
+        // }
     }
 
     variantObserver() {
-        // this._fetchCohortStats(e);
-        // this.variant;
-        // this.requestUpdate();
     }
 
     getSaveForm() {
@@ -161,14 +158,11 @@ export default class OpencgaInterpretationVariantReview extends LitElement {
                 break;
         }
 
-        debugger
         this.dispatchEvent(new CustomEvent("variantChange", {
             detail: {
                 value: this.variant,
                 update: this.updateParams
             },
-            // bubbles: true,
-            // composed: true
         }));
     }
 
@@ -187,5 +181,5 @@ export default class OpencgaInterpretationVariantReview extends LitElement {
     }
 }
 
-customElements.define("opencga-interpretation-variant-review", OpencgaInterpretationVariantReview);
+customElements.define("clinical-interpretation-variant-review", ClinicalInterpretationVariantReview);
 

src/core/webcomponents/variant/deprecated/opencga-variant-interpretation-grid.js

@@ -19,7 +19,7 @@ import UtilsNew from "../../../utilsNew.js";
 import PolymerUtils from "../../PolymerUtils.js";
 import VariantGridFormatter from "../variant-grid-formatter.js";
 import VariantUtils from "../variant-utils.js";
-import "../interpretation/opencga-interpretation-variant-review.js";
+import "../../clinical/clinical-interpretation-variant-review.js";
 import "../../commons/opencb-grid-toolbar.js";
 import "../../loading-spinner.js";
 

src/core/webcomponents/variant/interpretation/variant-interpreter-detail.js

@@ -16,7 +16,7 @@
 
 import {LitElement, html} from "/web_modules/lit-element.js";
 import UtilsNew from "../../../utilsNew.js";
-import "./opencga-interpretation-variant-review.js";
+import "../../clinical/clinical-interpretation-variant-review.js";
 import "../annotation/cellbase-variantannotation-view.js";
 import "../annotation/variant-consequence-type-view.js";
 import "../annotation/variant-annotation-clinical-view.js";

src/core/webcomponents/variant/interpretation/variant-interpreter-grid.js

@@ -22,7 +22,7 @@ import VariantGridFormatter from "../variant-grid-formatter.js";
 import GridCommons from "../../commons/grid-commons.js";
 import VariantUtils from "../variant-utils.js";
 import "./variant-interpreter-grid-config.js";
-import "./opencga-interpretation-variant-review.js";
+import "../../clinical/clinical-interpretation-variant-review.js";
 import "../../commons/opencb-grid-toolbar.js";
 import "../../loading-spinner.js";
 
@@ -987,7 +987,6 @@ export default class VariantInterpreterGrid extends LitElement {
     }
 
     onCancelVariant(e) {
-        debugger
         this._variantChanged = null;
     }
 
@@ -1035,11 +1034,11 @@ export default class VariantInterpreterGrid extends LitElement {
                         <div class="modal-header" style="padding: 5px 15px">
                             <h3>Review Variant</h3>
                         </div>
-                        <opencga-interpretation-variant-review .opencgaSession="${this.opencgaSession}"
-                                                               .variant="${this.variantReview}"
-                                                               mode=${"form"}
-                                                               @variantChange="${e => this.onVariantChange(e)}">
-                        </opencga-interpretation-variant-review>
+                        <clinical-interpretation-variant-review .opencgaSession="${this.opencgaSession}"
+                                                                .variant="${this.variantReview}"
+                                                                mode=${"form"}
+                                                                @variantChange="${e => this.onVariantChange(e)}">
+                        </clinical-interpretation-variant-review>
                         <div class="modal-footer">
                             <button type="button" class="btn btn-primary" data-dismiss="modal">Cancel</button>
                             <button type="button" class="btn btn-primary" data-dismiss="modal" @click="${e => this.onSaveVariant(e)}">OK</button>

src/core/webcomponents/variant/interpretation/variant-interpreter.js

@@ -95,10 +95,10 @@ class VariantInterpreter extends LitElement {
         this.requestUpdate();
 
         // To delete
-        // this.clinicalAnalysisId = "CA-2";
+        this.clinicalAnalysisId = "CA-2";
         // this.clinicalAnalysisId = "TN2_PINDEL";
         // this.clinicalAnalysisId = "WS-1801417";
-        // this.clinicalAnalysisIdObserver();
+        this.clinicalAnalysisIdObserver();
     }
 
      clinicalAnalysisIdObserver() {

src/index_full.js

@@ -66,7 +66,7 @@ import "./core/webcomponents/variant/opencga-variant-interpretation-detail.js";
 import "./core/webcomponents/variant/opencga-variant-filter.js";
 import "./core/webcomponents/variant/opencga-variant-interpretation-editor.js";
 import "./core/webcomponents/variant/opencga-variant-file-metrics.js";
-import "./core/webcomponents/variant/opencga-interpretation-variant-review.js";
+import "./core/webcomponents/variant/clinical-interpretation-variant-review.js";
 import "./core/webcomponents/cellbase/core/cellbase-gene-filter.js";
 import "./core/webcomponents/opencga/panels_example.js";
 import "./core/webcomponents/opencga/opencga-active-filters.js";