Rose: import.

Author: metofcm

.gitignore

@@ -1,27 +1,2 @@
 *.py[co]
-
-# Packages
-*.egg
-*.egg-info
-dist
-build
-eggs
-parts
-bin
-var
-sdist
-develop-eggs
-.installed.cfg
-
-# Installer logs
-pip-log.txt
-
-# Unit test / coverage reports
-.coverage
-.tox
-
-#Translations
-*.mo
-
-#Mr Developer
-.mr.developer.cfg
+etc/rose.conf

COPYING

@@ -0,0 +1 @@
+Refer to doc/rose-install.html for detail.

INSTALL

@@ -0,0 +1,60 @@
+(C) British Crown Copyright 2012 Met Office.
+
+Rose is a framework for managing and running scientific suites.
+
+Rose is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+Rose is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with Rose. If not, see <http://www.gnu.org/licenses/>.
+
+Rose documentation is licensed under the British Open Government
+Licence. See doc/rose-terms-of-use.html and
+<http://www.nationalarchives.gov.uk/doc/open-government-licence/>
+
+
+Licences for non-Rose works included in this distribution can be
+found in the licences/ directory.
+
+doc/rose-icon.png,
+etc/images/rose-icon.png,
+etc/images/rose-icon-trim.png,
+etc/images/rose-logo.png,
+etc/images/rose-splash-logo.png,
+etc/images/rosie-icon.png,
+etc/images/rosie-icon-trim.png,
+etc/metadata/all/etc/images/icon.png:
+    These icons are all derived from the public domain image at
+    <http://www.clker.com/clipart-compass-rose-variation.html>.
+
+etc/images/rose-config-edit/gnome_package_system.png:
+    This icon is part of the GNOME icon theme 2.28.0, licensed under
+    GPLv2. This theme was developed by:
+        Ulisse Perusin <[email protected]>
+        Riccardo Buzzotta <[email protected]>
+        Josef Vybíral <[email protected]>
+        Hylke Bons <[email protected]>
+        Ricardo González <[email protected]>
+        Lapo Calamandrei <[email protected]>
+        Rodney Dawes <[email protected]>
+        Luca Ferretti <[email protected]>
+        Tuomas Kuosmanen <[email protected]>
+        Andreas Nilsson <[email protected]>
+        Jakub Steiner <[email protected]>
+
+etc/images/rose-config-edit/gnome_package_system_*:
+    These icons are derivative works produced from
+    etc/images/rose-config-edit/gnome_package_system.png, and are
+    distributed in their preferred PNG form.
+
+lib/html/external/*:
+    These directories contain unmodified versions of external software
+    packages. Licences on usage and re-distribution are included for
+    each package. Please refer to them for detail.

README

@@ -0,0 +1,160 @@
+#!/usr/bin/env bash
+#-------------------------------------------------------------------------------
+# (C) British Crown Copyright 2012 Met Office.
+# 
+# This file is part of Rose, a framework for scientific suites.
+# 
+# Rose is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+# 
+# Rose is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+# 
+# You should have received a copy of the GNU General Public License
+# along with Rose. If not, see <http://www.gnu.org/licenses/>.
+#-------------------------------------------------------------------------------
+# NAME
+#     rose - environment for running scientific suites and applications
+#     rosie - revision/organisation of suites for identification/exploration
+#     rosa - rosie's admin utilities
+#
+# SYNOPSIS
+#     # "rose", "rosie" and "rosa" has the following interfaces:
+#     # Invoke a utility:
+#     rose UTIL [ARGS ...]
+#     # Print help and a list of available utilities:
+#     rose help
+#     # Print help for list of utilities.
+#     rose help UTIL ...
+#     # Print version information.
+#     rose version
+#
+# DESCRIPTION
+#     Simple launcher for utilities in the "rose", "rosie" or "rosa"
+#     name-spaces. Launch a "rose", "rosie" or "rosa" utility with the given
+#     ARGS.
+#-------------------------------------------------------------------------------
+if ${ROSE_DEBUG:-false}; then
+    set -x
+fi
+. $(dirname $0)/../lib/bash/rose_init
+rose_init
+
+function get_alias() {
+    local NAME=$1
+    local ALIAS=$(sed '/^#/d' $ROSE_HOME_BIN/$ROSE_NS-$NAME || true)
+    if [[ $(wc -l <<<"$ALIAS") == 1 ]] \
+        && grep -q "^exec \$(dirname \$0)/$ROSE_NS-.* \"\$@\"\$" <<<"$ALIAS"
+    then
+        ALIAS=${ALIAS#"exec \$(dirname \$0)/$ROSE_NS-"}
+        ALIAS=${ALIAS%' "$@"'}
+        echo $ALIAS
+    fi
+}
+
+function help_util() {
+    local NAME=$1
+    local COMMAND=$ROSE_HOME_BIN/$ROSE_NS-$NAME
+    if [[ ! -r $COMMAND ]]; then
+        echo "$1: utility not found." >&2
+        return 1
+    fi
+    local ALIAS=$(get_alias $NAME)
+    if [[ -n $ALIAS ]]; then
+        COMMAND=$ROSE_HOME_BIN/$ROSE_NS-$ALIAS
+    fi
+    case $(head -1 $COMMAND) in
+    *bash*)
+        awk '{
+            if (/^# NAME/) {
+                do {print substr($0, 3)} while (getline && !/^#----------/);
+            }
+        }' $COMMAND | ${PAGER:-less}
+        ;;
+    *python*)
+        $COMMAND --help | ${PAGER:-less} # FIXME: not too pretty at the moment
+        ;;
+    esac
+    return
+}
+
+#-------------------------------------------------------------------------------
+UTIL="help"
+if (($# > 0)); then
+    UTIL=$1
+    shift 1
+fi
+
+case $UTIL in
+help)
+    if (($# == 0)); then
+        rose_usage
+        echo
+        echo "$ROSE_NS provides the following utilities:"
+        for U in $(cd $ROSE_HOME_BIN && ls $ROSE_NS-*); do
+            NAME=$(sed "s/^$ROSE_NS-\\(.*\\)\$/\1/" <<<$U)
+            ALIAS=$(get_alias $NAME)
+            if [[ -n $ALIAS ]]; then
+                echo "    $NAME"
+                echo "        (=$ALIAS)"
+            else
+                echo "    $NAME"
+                sed '1,/^# DESCRIPTION$/d;{s/^# /    /;q;}' $ROSE_HOME_BIN/$U
+            fi
+        done
+        exit 0
+    fi
+    RC=0
+    for U in "$@"; do
+        if [[ $U == 'help' || $U == 'version' ]]; then
+            continue
+        fi
+        help_util $U || RC=$?
+    done
+    exit $RC
+    :;;
+version)
+    awk '{
+        if (/^# NAME/) {
+            while (getline && !/^#$/) {
+                sub(/^# */, "");
+                print $0;
+            }
+        }
+    }' $0
+    if [[ -f $ROSE_HOME/etc/rose/version ]]; then
+        cat $ROSE_HOME/etc/rose/version
+    fi
+    echo
+    echo "Path: $ROSE_HOME"
+    (cd $ROSE_HOME && (svn info | sed '/^Path: /d') && svn status) 2>/dev/null \
+        || true
+    exit
+    :;;
+esac
+
+COMMAND=$(dirname $0)/$ROSE_NS-$UTIL
+if [[ ! -f $COMMAND || ! -x $COMMAND ]]; then
+    echo "$ROSE_NS: $UTIL: unknown utility. Abort." >&2
+    echo "Type \"$ROSE_NS help\" for a list of utilities." >&2
+    exit 1
+fi
+if (($# > 0)) && [[ $1 == '--help' || $1 == '-h' ]]; then
+    help_util $UTIL
+    exit
+fi
+if [[ ${PATH:-} != *$ROSE_HOME_BIN:* ]]; then
+    PATH=$ROSE_HOME_BIN:${PATH:-}
+    export PATH
+fi
+if [[ ${PYTHONPATH:-} != *$ROSE_HOME/lib/python:* ]]; then
+    PYTHONPATH=$ROSE_HOME/lib/python:${PYTHONPATH:-}
+    export PYTHONPATH
+fi
+ROSE_UTIL=$UTIL
+export ROSE_UTIL
+exec $COMMAND "$@"

README.md

@@ -0,0 +1,33 @@
+#!/usr/bin/env bash
+#-------------------------------------------------------------------------------
+# (C) British Crown Copyright 2012 Met Office.
+# 
+# This file is part of Rose, a framework for scientific suites.
+# 
+# Rose is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+# 
+# Rose is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+# 
+# You should have received a copy of the GNU General Public License
+# along with Rose. If not, see <http://www.gnu.org/licenses/>.
+#-------------------------------------------------------------------------------
+# NAME
+#     rose ana
+#
+# SYNOPSIS
+#     rose ana FILENAMES
+#
+# DESCRIPTION
+#     Run the given test config files through the analysis engine.
+#
+#
+# OPTIONS
+#     None so far
+#-------------------------------------------------------------------------------
+exec python -m rose.ana "$@"

bin/rose

@@ -0,0 +1,61 @@
+#!/usr/bin/env bash
+#-------------------------------------------------------------------------------
+# (C) British Crown Copyright 2012 Met Office.
+# 
+# This file is part of Rose, a framework for scientific suites.
+# 
+# Rose is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+# 
+# Rose is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+# 
+# You should have received a copy of the GNU General Public License
+# along with Rose. If not, see <http://www.gnu.org/licenses/>.
+#-------------------------------------------------------------------------------
+# NAME
+#     rose-app-run
+#
+# SYNOPSIS
+#     rose app-run [OPTIONS] [--] [COMMAND ...]
+#
+# DESCRIPTION
+#     Run an application according to its configuration.
+#
+#     Determine the command to run in this order:
+#     1. If COMMAND is specified, invoke the command.
+#     2. If the --command-key=KEY option is defined, invoke the command
+#        specified in [command]KEY.
+#     3. If the environment variable ROSE_TASK_NAME is defined and a setting in
+#        the [command] section has a key matching the value of the environment
+#        variable, then the value of the setting is used as the command.
+#     4. Invoke the command specified in [command]default.
+#
+# OPTION
+#     --config=DIR; -C DIR
+#         Specify the configuration directory of the application. (default=$PWD)
+#     --command-key=KEY; -c KEY
+#         Invoke the command specified in [command]KEY.
+#     --define=[SECTION]KEY=VALUE; -D [SECTION]KEY=VALUE
+#         Each of this overrides the [SECTION]KEY setting with a given VALUE.
+#         Can be used to disable a setting using the syntax --define=[SECTION]!KEY
+#         or even --define=[!SECTION].
+#     --install-only; -i
+#         Install files only. Do not invoke the run.
+#     --new, -N
+#         Remove all items in $PWD before doing anything. This option only
+#         works with the --config=DIR option and if $PWD is not DIR.
+#     --no-overwrite
+#         Do not overwrite existing files.
+#     --opt-conf-key=KEY, -O KEY
+#         Each of this switches on an optional configuration identified by KEY.
+#     --quiet, -q
+#         Decrement verbosity.
+#     --verbose; -v
+#         Increment verbosity.
+#-------------------------------------------------------------------------------
+exec python -m rose.run app "$@"