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anaconda environment to run the Vox2Vox model.

Author: mdciri

v2v_env.yml

@@ -0,0 +1,166 @@
+name: v2v
+channels:
+  - defaults
+dependencies:
+  - _libgcc_mutex=0.1=main
+  - _tflow_select=2.1.0=gpu
+  - absl-py=0.9.0=py37_0
+  - asn1crypto=1.3.0=py37_0
+  - astor=0.8.0=py37_0
+  - attrs=19.3.0=py_0
+  - backcall=0.1.0=py37_0
+  - blas=1.0=mkl
+  - bleach=3.1.0=py_0
+  - blinker=1.4=py37_0
+  - c-ares=1.15.0=h7b6447c_1001
+  - ca-certificates=2020.1.1=0
+  - cachetools=3.1.1=py_0
+  - certifi=2019.11.28=py37_0
+  - cffi=1.14.0=py37h2e261b9_0
+  - chardet=3.0.4=py37_1003
+  - click=7.0=py_0
+  - cryptography=2.8=py37h1ba5d50_0
+  - cudatoolkit=10.1.243=h6bb024c_0
+  - cudnn=7.6.5=cuda10.1_0
+  - cupti=10.1.168=0
+  - cycler=0.10.0=py37_0
+  - dbus=1.13.12=h746ee38_0
+  - decorator=4.4.1=py_0
+  - defusedxml=0.6.0=py_0
+  - entrypoints=0.3=py37_0
+  - expat=2.2.6=he6710b0_0
+  - fontconfig=2.13.0=h9420a91_0
+  - freetype=2.9.1=h8a8886c_1
+  - gast=0.2.2=py37_0
+  - glib=2.63.1=h5a9c865_0
+  - gmp=6.1.2=h6c8ec71_1
+  - google-auth=1.11.2=py_0
+  - google-auth-oauthlib=0.4.1=py_2
+  - google-pasta=0.1.8=py_0
+  - grpcio=1.27.2=py37hf8bcb03_0
+  - gst-plugins-base=1.14.0=hbbd80ab_1
+  - gstreamer=1.14.0=hb453b48_1
+  - h5py=2.10.0=py37h7918eee_0
+  - hdf5=1.10.4=hb1b8bf9_0
+  - icu=58.2=h9c2bf20_1
+  - idna=2.8=py37_0
+  - importlib_metadata=1.5.0=py37_0
+  - intel-openmp=2020.0=166
+  - ipykernel=5.1.4=py37h39e3cac_0
+  - ipython=7.12.0=py37h5ca1d4c_0
+  - ipython_genutils=0.2.0=py37_0
+  - ipywidgets=7.5.1=py_0
+  - jedi=0.16.0=py37_0
+  - jinja2=2.11.1=py_0
+  - joblib=0.14.1=py_0
+  - jpeg=9b=h024ee3a_2
+  - jsonschema=3.2.0=py37_0
+  - jupyter=1.0.0=py37_7
+  - jupyter_client=5.3.4=py37_0
+  - jupyter_console=6.1.0=py_0
+  - jupyter_core=4.6.1=py37_0
+  - keras-applications=1.0.8=py_0
+  - keras-preprocessing=1.1.0=py_1
+  - kiwisolver=1.1.0=py37he6710b0_0
+  - ld_impl_linux-64=2.33.1=h53a641e_7
+  - libedit=3.1.20181209=hc058e9b_0
+  - libffi=3.2.1=hd88cf55_4
+  - libgcc-ng=9.1.0=hdf63c60_0
+  - libgfortran-ng=7.3.0=hdf63c60_0
+  - libpng=1.6.37=hbc83047_0
+  - libprotobuf=3.11.4=hd408876_0
+  - libsodium=1.0.16=h1bed415_0
+  - libstdcxx-ng=9.1.0=hdf63c60_0
+  - libtiff=4.1.0=h2733197_0
+  - libuuid=1.0.3=h1bed415_2
+  - libxcb=1.13=h1bed415_1
+  - libxml2=2.9.9=hea5a465_1
+  - markdown=3.1.1=py37_0
+  - markupsafe=1.1.1=py37h7b6447c_0
+  - matplotlib=3.1.3=py37_0
+  - matplotlib-base=3.1.3=py37hef1b27d_0
+  - mistune=0.8.4=py37h7b6447c_0
+  - mkl=2020.0=166
+  - mkl-service=2.3.0=py37he904b0f_0
+  - mkl_fft=1.0.15=py37ha843d7b_0
+  - mkl_random=1.1.0=py37hd6b4f25_0
+  - nbconvert=5.6.1=py37_0
+  - nbformat=5.0.4=py_0
+  - ncurses=6.2=he6710b0_0
+  - notebook=6.0.3=py37_0
+  - numpy=1.18.1=py37h4f9e942_0
+  - numpy-base=1.18.1=py37hde5b4d6_1
+  - oauthlib=3.1.0=py_0
+  - olefile=0.46=py_0
+  - openssl=1.1.1d=h7b6447c_4
+  - opt_einsum=3.1.0=py_0
+  - pandoc=2.2.3.2=0
+  - pandocfilters=1.4.2=py37_1
+  - parso=0.6.1=py_0
+  - pcre=8.43=he6710b0_0
+  - pexpect=4.8.0=py37_0
+  - pickleshare=0.7.5=py37_0
+  - pillow=7.0.0=py37hb39fc2d_0
+  - pip=20.0.2=py37_1
+  - prometheus_client=0.7.1=py_0
+  - prompt_toolkit=3.0.3=py_0
+  - protobuf=3.11.4=py37he6710b0_0
+  - ptyprocess=0.6.0=py37_0
+  - pyasn1=0.4.8=py_0
+  - pyasn1-modules=0.2.7=py_0
+  - pycparser=2.19=py_0
+  - pygments=2.5.2=py_0
+  - pyjwt=1.7.1=py37_0
+  - pyopenssl=19.1.0=py37_0
+  - pyparsing=2.4.6=py_0
+  - pyqt=5.9.2=py37h05f1152_2
+  - pyrsistent=0.15.7=py37h7b6447c_0
+  - pysocks=1.7.1=py37_0
+  - python=3.7.6=h0371630_2
+  - python-dateutil=2.8.1=py_0
+  - pyzmq=18.1.1=py37he6710b0_0
+  - qt=5.9.7=h5867ecd_1
+  - qtconsole=4.6.0=py_1
+  - readline=7.0=h7b6447c_5
+  - requests=2.22.0=py37_1
+  - requests-oauthlib=1.3.0=py_0
+  - rsa=4.0=py_0
+  - scikit-learn=0.22.1=py37hd81dba3_0
+  - scipy=1.4.1=py37h0b6359f_0
+  - send2trash=1.5.0=py37_0
+  - setuptools=45.2.0=py37_0
+  - sip=4.19.8=py37hf484d3e_0
+  - six=1.14.0=py37_0
+  - sqlite=3.31.1=h7b6447c_0
+  - tensorboard=2.1.0=py3_0
+  - tensorflow=2.1.0=gpu_py37h7a4bb67_0
+  - tensorflow-base=2.1.0=gpu_py37h6c5654b_0
+  - tensorflow-estimator=2.1.0=pyhd54b08b_0
+  - tensorflow-gpu=2.1.0=h0d30ee6_0
+  - termcolor=1.1.0=py37_1
+  - terminado=0.8.3=py37_0
+  - testpath=0.4.4=py_0
+  - tk=8.6.8=hbc83047_0
+  - tornado=6.0.3=py37h7b6447c_3
+  - traitlets=4.3.3=py37_0
+  - urllib3=1.25.8=py37_0
+  - wcwidth=0.1.8=py_0
+  - webencodings=0.5.1=py37_1
+  - werkzeug=1.0.0=py_0
+  - wheel=0.34.2=py37_0
+  - widgetsnbextension=3.5.1=py37_0
+  - wrapt=1.11.2=py37h7b6447c_0
+  - xz=5.2.4=h14c3975_4
+  - zeromq=4.3.1=he6710b0_3
+  - zipp=2.2.0=py_0
+  - zlib=1.2.11=h7b6447c_3
+  - zstd=1.3.7=h0b5b093_0
+  - pip:
+    - elasticdeform==0.4.6
+    - medpy==0.4.0
+    - nibabel==3.0.1
+    - simpleitk==1.2.4
+    - tensorflow-addons==0.8.2
+    - typeguard==2.7.1
+prefix: /home/marci30/.conda/envs/v2v
+