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Generate links info for reference sequence #12

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noporpoise opened this issue Aug 10, 2015 · 0 comments
Open

Generate links info for reference sequence #12

noporpoise opened this issue Aug 10, 2015 · 0 comments
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enhancement

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@noporpoise
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The bubble caller has less power to assemble the reference allele vs sample allele since the reference colour is just a bag of kmers without link information. Reference sequences can provide reasonable link info if we break at repetitive kmers.
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