General soay sheep data processing.

Scripts to:

Name		Name	Last commit message	Last commit date
Latest commit History 6 Commits
.DS_Store		.DS_Store
.gitignore		.gitignore
1_oar31_merging.R		1_oar31_merging.R
2_ld_decay.R		2_ld_decay.R
Extract_Flanking_Sequences.R		Extract_Flanking_Sequences.R
README.md		README.md
detailed_check_RAM_mapping.R		detailed_check_RAM_mapping.R
evaluate_alignment.R		evaluate_alignment.R
explore_sheep_data.R		explore_sheep_data.R
extract_from_db.R		extract_from_db.R
flanking_seq_test.R		flanking_seq_test.R
old_vs_new_map_positions.R		old_vs_new_map_positions.R
ramb_1_probe_seqs_to_fasta.R		ramb_1_probe_seqs_to_fasta.R
ramb_2_align_flanks_to_ref_code.txt		ramb_2_align_flanks_to_ref_code.txt
ramb_3_postprocess_alignment.R		ramb_3_postprocess_alignment.R
ramb_4_Checking_OAR_Ramb_Probe_Alignments.R		ramb_4_Checking_OAR_Ramb_Probe_Alignments.R
ramb_5_process_multimapped_with_ld_info.R		ramb_5_process_multimapped_with_ld_info.R
ramb_6_check_position_mismatches.R		ramb_6_check_position_mismatches.R
ramb_7_create_new_plink.R		ramb_7_create_new_plink.R
ramb_8_merge_hd_ld.R		ramb_8_merge_hd_ld.R
ramb_8_merge_hd_ld.sh		ramb_8_merge_hd_ld.sh
restructure_flanking_seqs.R		restructure_flanking_seqs.R
sheep.Rproj		sheep.Rproj

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