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update doc

update doc #3647

Workflow file for this run

name: CI
on:
push:
branches: master
pull_request:
branches: master
workflow_dispatch:
jobs:
test:
name: Run tests
runs-on: ubuntu-latest
steps:
- name: Check out repository
uses: actions/checkout@v2
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: 3.10.7
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install -r requirements.txt
pip install pytest pytest-cov pytest-shell
python setup.py install
- name: Install Python Poetry
run: |
python -m pip install --upgrade pip
pip install poetry
poetry install --with dev
- name: test if api works
run: poetry run python examples/api/jigen_dann_transformer.py
- name: Generate coverage report
run: rm -rf zoutput && poetry run pytest --maxfail=1 -vvv --tb=short --cov=domainlab tests/ --cov-report=xml
- name: Upload coverage to Codecov
uses: codecov/codecov-action@v1
with:
flags: unittests
env_vars: OS,PYTHON
fail_ci_if_error: true
env:
CODECOV_TOKEN: 02ecb3ac-b7ce-4ea4-90a2-961c3d1a1030
- name: check if readme yaml works
run: rm -rf zoutput && python main_out.py -c ./examples/conf/vlcs_diva_mldg_dial.yaml
- name: test if examples in markdown works
run: bash -x -v scripts/ci_run_examples.sh
- name: test if benchmark works
run: |
pip install snakemake==7.32.0 && pip install pulp==2.7.0
echo "insert a shebang line (#!/bin/bash -x -v) at the beginning of the bash script"
sed -i '1s/^/#!\/bin\/bash -x -v\n/' run_benchmark_standalone.sh
bash -x -v run_benchmark_standalone.sh examples/benchmark/demo_shared_hyper_grid.yaml
cat zoutput/benchmarks/mnist_benchmark_grid*/hyperparameters.csv
cat zoutput/benchmarks/mnist_benchmark_grid*/results.csv