removed condition on the identity. mashmaps --pi is enough and that one was just not correct

Author: Dmitry-Antipov

src/Snakefiles/8-hicPipeline.sm

@@ -103,7 +103,7 @@ cat > ./run_mashmap.sh <<EOF
 set -e
 echo "---Running MashMap"
 {params.MASHMAP} -r ../{input.unitigs_hpc} -q ../{input.unitigs_hpc} -t {threads} -f none --pi {params.MASHMAP_DIV} -s 10000 -o mashmap.out
-cat mashmap.out |awk '{{if (\$NF > 99 && \$4-\$3 > 100000 && \$1 != \$6) print \$1"\\t"\$6"\\t"\$4-\$3}}'|sort |uniq > ../{output.unitigs_matches}
+cat mashmap.out |awk '{{if (\$4-\$3 > 100000 && \$1 != \$6) print \$1"\\t"\$6"\\t"\$4-\$3}}'|sort |uniq > ../{output.unitigs_matches}
 EOF
 
 chmod +x ./run_mashmap.sh