diff --git a/docs/cli.rst b/docs/cli.rst
new file mode 100644
index 0000000..ebc75df
--- /dev/null
+++ b/docs/cli.rst
@@ -0,0 +1,81 @@
+CLI
+===
+
+.. module:: mara_pipelines.cli
+
+This part of the documentation covers all the available cli commands of Mara DB.
+
+
+``run``
+-----------
+
+.. tabs::
+
+    .. group-tab:: Mara CLI
+
+        .. code-block:: shell
+
+            mara pipelines run [--path <path>] [--nodes <nodes>] [--with_upstreams] [--disable-colors]
+
+    .. group-tab:: Mara Flask App
+
+        .. code-block:: python
+
+            flask mara-pipelines run [--path <path>] [--nodes <nodes>] [--with_upstreams] [--disable-colors]
+
+
+Runs a pipeline or a sub-set of its nodes
+
+Available arguments:
+
+* `--path <path>` - The id of of the pipeline to run. Example: "pipeline-id"; "" (default) is the root pipeline.
+* `--nodes <nodes>` - IDs of sub-nodes of the pipeline to run, separated by comma. When provided, then only these nodes are run. Example: "do-this,do-that".
+* `--with_upstreams` - Also run all upstreams of --nodes within the pipeline.
+* `--disable-colors` - Output logs without coloring them.
+
+
+``run_interactively``
+-----------
+
+.. tabs::
+
+    .. group-tab:: Mara CLI
+
+        .. code-block:: shell
+
+            mara pipelines run-interactively
+
+    .. group-tab:: Mara Flask App
+
+        .. code-block:: python
+
+            flask mara-pipelines run-interactively
+
+
+Select and run data pipelines
+
+
+
+``reset_incremental_processing``
+-----------
+
+.. tabs::
+
+    .. group-tab:: Mara CLI
+
+        .. code-block:: shell
+
+            mara pipelines reset-incremental-processing [--path <path>]
+
+    .. group-tab:: Mara Flask App
+
+        .. code-block:: python
+
+            flask mara-pipelines reset-incremental-processing [--path <path>]
+
+
+Reset status of incremental processing for a node
+
+Available arguments:
+
+* `--path <path>` - The parent ids of of the node to reset. Example: "pipeline-id,sub-pipeline-id".
diff --git a/docs/index.rst b/docs/index.rst
index 013ac9e..b43dd9b 100644
--- a/docs/index.rst
+++ b/docs/index.rst
@@ -35,6 +35,17 @@ This part of the documentation focuses on step-by-step instructions how to use t
    config
 
 
+CLI commands
+------------
+
+When you are looking at available CLI commands, here you are at the right place.
+
+.. toctree::
+   :maxdepth: 2
+
+   cli
+
+
 API Reference
 -------------