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modules.json
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modules.json
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{
"name": "nf-core/rnaseq",
"homePage": "https://github.com/nf-core/rnaseq",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bbmap/bbsplit": {
"branch": "master",
"git_sha": "75027bf77472b1f4fd2cdd7e46f83119dfb0f2c6",
"installed_by": ["modules"]
},
"cat/fastq": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
"custom/dumpsoftwareversions": {
"branch": "master",
"git_sha": "b6d4d476aee074311c89d82a69c1921bd70c8180",
"installed_by": ["modules"]
},
"custom/getchromsizes": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
"fastp": {
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"git_sha": "20a508676f40d0fd3f911ac595af91ec845704c4",
"installed_by": ["modules", "fastq_fastqc_umitools_fastp"]
},
"fastqc": {
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["fastq_fastqc_umitools_trimgalore", "fastq_fastqc_umitools_fastp"]
},
"fq/subsample": {
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"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["fastq_subsample_fq_salmon", "modules"]
},
"gffread": {
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},
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},
"hisat2/align": {
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"installed_by": ["fastq_align_hisat2"]
},
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},
"preseq/lcextrap": {
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},
"qualimap/rnaseq": {
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"rseqc/bamstat": {
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},
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"rseqc/readdistribution": {
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"rseqc/tin": {
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"salmon/index": {
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"samtools/flagstat": {
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"stringtie/stringtie": {
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"untar": {
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},
"subworkflows": {
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}
}
}
}
}