-Notably, PhosMap seamlessly accommodates preprocessed data originating from either Mascot integrated in Firmiana or Andromeda derived from MaxQuant. Serving as a versatile and user-friendly platform, PhosMap extends its prowess through a trifecta of deployment options: a web server, a local graphical interface, and an R package. For users without bioinformatics skills, the web server is suitable for analyzing small data volumes. When dealing with larger data volumes, it is recommended to utilize the local graphical interface of PhosMap. Meanwhile, for users with programming skills, the locally installed graphical interface allows for convenient customization and expansion. Moreover, the PhosMap R package offers a highly flexible platform for advanced analysis.
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