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I am having a similar issue as described in #145 but with subseq. Filtering the fastq file with a small name.lst works fine (under 10M reads,1GB), but when I increase the name.lst file (around 500M reads, 15GB) the output is empty. I thought it could be a problem of running out of memory, as suggested in #145, however I am in a computer cluster providing 16GB of memory for this job, and the maxvmem used is only 13GB. Is this a maximum from seqtk itself?
My plan to carry on is to divide the name.lst into smaller chunks, and then merge the output file. (should be the same shouldn't it?)
The text was updated successfully, but these errors were encountered:
I am having a similar issue as described in #145 but with subseq. Filtering the fastq file with a small name.lst works fine (under 10M reads,1GB), but when I increase the name.lst file (around 500M reads, 15GB) the output is empty. I thought it could be a problem of running out of memory, as suggested in #145, however I am in a computer cluster providing 16GB of memory for this job, and the maxvmem used is only 13GB. Is this a maximum from seqtk itself?
My plan to carry on is to divide the name.lst into smaller chunks, and then merge the output file. (should be the same shouldn't it?)
The text was updated successfully, but these errors were encountered: