From ccdc02f0503d1f5e53ad57f53902f4867f8efc19 Mon Sep 17 00:00:00 2001
From: Anita Lerch <lerch-a@users.noreply.github.com>
Date: Wed, 15 May 2019 12:36:55 -0400
Subject: [PATCH] Update Bioconductor installation instructions.

---
 docs/README.md | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/docs/README.md b/docs/README.md
index 174ea5c..ab4ba24 100644
--- a/docs/README.md
+++ b/docs/README.md
@@ -15,8 +15,9 @@ HaplotypR is distributed under the GNU General Public License, version 3.
 To install HaplotypR start R and first install ShortRead by typing:
 
 ```R
-source("http://bioconductor.org/biocLite.R")
-biocLite("ShortRead")
+if (!requireNamespace("BiocManager", quietly = TRUE))
+    install.packages("BiocManager")
+BiocManager::install("ShortRead")
 ```
 
 Then install devtools by typing