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This turned out to be a deeper rabbit hole than I was expecting. Found several side cases which were causing the errors which may arise when training on really weird passwords or very small training lists. This will be fixed in version 4.0.1. As a side effect though, I probably should create a warning when the program suspects you are training on a password list or .pot file vs a training list since I guarantee that I'll make this mistake again in the future.
Need to add the feature listed in the issue title. Not that I recently did this...
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